Gene : Sobic.002G242200 S. bicolor v3.1.1
Defline:  (1 of 3) KOG1003 - Actin filament-coating protein tropomyosin Genomic Order:  2474
Name:  ? Sobic.002G242200 Secondary Identifier:  ? PAC:37954384
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G242200 0.5kb upstream 0.5kb upstream 3533 true Chr02: 63150942-63154474 Sorghum bicolor
Sobic.002G242200 0.5kb upstream 0.5kb upstream 500 false Chr02: 63153975-63154474 Sorghum bicolor
Sobic.002G242200 0.5kb downstream 0.5kb downstream 3533 true Chr02: 63150442-63153974 Sorghum bicolor
Sobic.002G242200 0.5kb downstream 0.5kb downstream 500 false Chr02: 63150442-63150941 Sorghum bicolor
Sobic.002G242200 1.0kb upstream 1.0kb upstream 4033 true Chr02: 63150942-63154974 Sorghum bicolor
Sobic.002G242200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 63153975-63154974 Sorghum bicolor
Sobic.002G242200 1.0kb downstream 1.0kb downstream 4033 true Chr02: 63149942-63153974 Sorghum bicolor
Sobic.002G242200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 63149942-63150941 Sorghum bicolor
Sobic.002G242200 2.0kb upstream 2.0kb upstream 5033 true Chr02: 63150942-63155974 Sorghum bicolor
Sobic.002G242200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 63153975-63155974 Sorghum bicolor
Sobic.002G242200 2.0kb downstream 2.0kb downstream 5033 true Chr02: 63148942-63153974 Sorghum bicolor
Sobic.002G242200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 63148942-63150941 Sorghum bicolor
Sobic.002G242200 5.0kb upstream 5.0kb upstream 8033 true Chr02: 63150942-63158974 Sorghum bicolor
Sobic.002G242200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 63153975-63158974 Sorghum bicolor
Sobic.002G242200 5.0kb downstream 5.0kb downstream 8033 true Chr02: 63145942-63153974 Sorghum bicolor
Sobic.002G242200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 63145942-63150941 Sorghum bicolor
Sobic.002G242200 10.0kb upstream 10.0kb upstream 13033 true Chr02: 63150942-63163974 Sorghum bicolor
Sobic.002G242200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 63153975-63163974 Sorghum bicolor
Sobic.002G242200 10.0kb downstream 10.0kb downstream 13033 true Chr02: 63140942-63153974 Sorghum bicolor
Sobic.002G242200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 63140942-63150941 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190274 5267 Panicoideae View MSA
124579303 5269 Grass View MSA
122049938 5273 Angiosperm View MSA
121311655 5274 Embryophyte View MSA
123348925 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.686     High High
cufflinks 5.731       Low
cufflinks 20.537     High  
cufflinks 27.108     High High
cufflinks 16.449     High  
cufflinks 19.53     High  
cufflinks 10.135       Low
cufflinks 6.753       Low
cufflinks 19.944     High  
cufflinks 16.705     High  
cufflinks 19.008     High  
cufflinks 19.161     High  
cufflinks 16.512     High  
cufflinks 17.28     High  
cufflinks 22.691     High  
cufflinks 16.19     High  
cufflinks 12.521     High  
cufflinks 12.103     High  
cufflinks 18.111     High  
cufflinks 18.594     High  
cufflinks 13.319        
cufflinks 22.226     High  
cufflinks 20.253     High  
cufflinks 20.139     High  
cufflinks 11.06     High  
cufflinks 4.512       Low
cufflinks 15.661     High  
cufflinks 39.575     High High
cufflinks 10.82        
cufflinks 22.533     High  

0 Strain