Gene : Sobic.006G153400 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  1605
Name:  ? Sobic.006G153400 Secondary Identifier:  ? PAC:37948535
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ANAEROFRUCAT-PWY Sorghum bicolor pathologic  
Sbicolor ANAGLYCOLYSIS-PWY Sorghum bicolor pathologic  
Sbicolor GLUCOSE1PMETAB-PWY Sorghum bicolor pathologic  
Sbicolor PWY-621 Sorghum bicolor pathologic  
Sbicolor PWY-7238 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G153400 0.5kb upstream 0.5kb upstream 6853 true Chr06: 51356558-51363410 Sorghum bicolor
Sobic.006G153400 0.5kb upstream 0.5kb upstream 500 false Chr06: 51356558-51357057 Sorghum bicolor
Sobic.006G153400 0.5kb downstream 0.5kb downstream 6853 true Chr06: 51357058-51363910 Sorghum bicolor
Sobic.006G153400 0.5kb downstream 0.5kb downstream 500 false Chr06: 51363411-51363910 Sorghum bicolor
Sobic.006G153400 1.0kb upstream 1.0kb upstream 7353 true Chr06: 51356058-51363410 Sorghum bicolor
Sobic.006G153400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 51356058-51357057 Sorghum bicolor
Sobic.006G153400 1.0kb downstream 1.0kb downstream 7353 true Chr06: 51357058-51364410 Sorghum bicolor
Sobic.006G153400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 51363411-51364410 Sorghum bicolor
Sobic.006G153400 2.0kb upstream 2.0kb upstream 8353 true Chr06: 51355058-51363410 Sorghum bicolor
Sobic.006G153400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 51355058-51357057 Sorghum bicolor
Sobic.006G153400 2.0kb downstream 2.0kb downstream 8353 true Chr06: 51357058-51365410 Sorghum bicolor
Sobic.006G153400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 51363411-51365410 Sorghum bicolor
Sobic.006G153400 5.0kb upstream 5.0kb upstream 11353 true Chr06: 51352058-51363410 Sorghum bicolor
Sobic.006G153400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 51352058-51357057 Sorghum bicolor
Sobic.006G153400 5.0kb downstream 5.0kb downstream 11353 true Chr06: 51357058-51368410 Sorghum bicolor
Sobic.006G153400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 51363411-51368410 Sorghum bicolor
Sobic.006G153400 10.0kb upstream 10.0kb upstream 16353 true Chr06: 51347058-51363410 Sorghum bicolor
Sobic.006G153400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 51347058-51357057 Sorghum bicolor
Sobic.006G153400 10.0kb downstream 10.0kb downstream 16353 true Chr06: 51357058-51373410 Sorghum bicolor
Sobic.006G153400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 51363411-51373410 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194272 5267 Panicoideae View MSA
124577814 5269 Grass View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.262       Low
cufflinks 68.491     High High
cufflinks 23.275     High  
cufflinks 16.92     High  
cufflinks 1.631       Low
cufflinks 14.185     High  
cufflinks 18.039     High  
cufflinks 35.468     High High
cufflinks 9.816        
cufflinks 14.204     High  
cufflinks 13.11     High  
cufflinks 15.074     High  
cufflinks 6.506        
cufflinks 8.277        
cufflinks 12.08     High  
cufflinks 46.381     High High
cufflinks 17.811     High  
cufflinks 14.95     High  
cufflinks 15.973     High  
cufflinks 15.226     High  
cufflinks 6.706        
cufflinks 10.01        
cufflinks 14.643     High  
cufflinks 13.216     High  
cufflinks 62.988     High High
cufflinks 103.789     High High
cufflinks 12.102     High  
cufflinks 4.695        
cufflinks 9.223        
cufflinks 9.449        

0 Strain