Gene : Sobic.002G230301 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31100:SF1 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 17-RELATED Genomic Order:  2359
Name:  ? Sobic.002G230301 Secondary Identifier:  ? PAC:37954692
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0 Pathways

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G230301 0.5kb upstream 0.5kb upstream 1565 true Chr02: 62176041-62177605 Sorghum bicolor
Sobic.002G230301 0.5kb upstream 0.5kb upstream 500 false Chr02: 62177106-62177605 Sorghum bicolor
Sobic.002G230301 0.5kb downstream 0.5kb downstream 1565 true Chr02: 62175541-62177105 Sorghum bicolor
Sobic.002G230301 0.5kb downstream 0.5kb downstream 500 false Chr02: 62175541-62176040 Sorghum bicolor
Sobic.002G230301 1.0kb upstream 1.0kb upstream 2065 true Chr02: 62176041-62178105 Sorghum bicolor
Sobic.002G230301 1.0kb upstream 1.0kb upstream 1000 false Chr02: 62177106-62178105 Sorghum bicolor
Sobic.002G230301 1.0kb downstream 1.0kb downstream 2065 true Chr02: 62175041-62177105 Sorghum bicolor
Sobic.002G230301 1.0kb downstream 1.0kb downstream 1000 false Chr02: 62175041-62176040 Sorghum bicolor
Sobic.002G230301 2.0kb upstream 2.0kb upstream 3065 true Chr02: 62176041-62179105 Sorghum bicolor
Sobic.002G230301 2.0kb upstream 2.0kb upstream 2000 false Chr02: 62177106-62179105 Sorghum bicolor
Sobic.002G230301 2.0kb downstream 2.0kb downstream 3065 true Chr02: 62174041-62177105 Sorghum bicolor
Sobic.002G230301 2.0kb downstream 2.0kb downstream 2000 false Chr02: 62174041-62176040 Sorghum bicolor
Sobic.002G230301 5.0kb upstream 5.0kb upstream 6065 true Chr02: 62176041-62182105 Sorghum bicolor
Sobic.002G230301 5.0kb upstream 5.0kb upstream 5000 false Chr02: 62177106-62182105 Sorghum bicolor
Sobic.002G230301 5.0kb downstream 5.0kb downstream 6065 true Chr02: 62171041-62177105 Sorghum bicolor
Sobic.002G230301 5.0kb downstream 5.0kb downstream 5000 false Chr02: 62171041-62176040 Sorghum bicolor
Sobic.002G230301 10.0kb upstream 10.0kb upstream 11065 true Chr02: 62176041-62187105 Sorghum bicolor
Sobic.002G230301 10.0kb upstream 10.0kb upstream 10000 false Chr02: 62177106-62187105 Sorghum bicolor
Sobic.002G230301 10.0kb downstream 10.0kb downstream 11065 true Chr02: 62166041-62177105 Sorghum bicolor
Sobic.002G230301 10.0kb downstream 10.0kb downstream 10000 false Chr02: 62166041-62176040 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180097 5267 Panicoideae View MSA
124586532 5269 Grass View MSA
122046470 5273 Angiosperm View MSA
121310610 5274 Embryophyte View MSA
123348051 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.016       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.282        
cufflinks 0.04     Low  
cufflinks 0.146        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low Low
cufflinks 0.031     Low  
cufflinks 0.032     Low  
cufflinks 0.039     Low  
cufflinks 0.031     Low  
cufflinks 0.068     Low  
cufflinks 0.188        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.065     Low  
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.122        
cufflinks 0.709       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.056     Low  
cufflinks 0.015     Low Low
cufflinks 0.03     Low  
cufflinks 0.051     Low  
cufflinks 0.169        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.395       High

0 Strain