Gene : Sobic.002G224700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13087 - NF-KAPPA B ACTIVATING PROTEIN Genomic Order:  2301
Name:  ? Sobic.002G224700 Secondary Identifier:  ? PAC:37951338
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G224700 0.5kb upstream 0.5kb upstream 2554 true Chr02: 61646559-61649112 Sorghum bicolor
Sobic.002G224700 0.5kb upstream 0.5kb upstream 500 false Chr02: 61646559-61647058 Sorghum bicolor
Sobic.002G224700 0.5kb downstream 0.5kb downstream 2554 true Chr02: 61647059-61649612 Sorghum bicolor
Sobic.002G224700 0.5kb downstream 0.5kb downstream 500 false Chr02: 61649113-61649612 Sorghum bicolor
Sobic.002G224700 1.0kb upstream 1.0kb upstream 3054 true Chr02: 61646059-61649112 Sorghum bicolor
Sobic.002G224700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 61646059-61647058 Sorghum bicolor
Sobic.002G224700 1.0kb downstream 1.0kb downstream 3054 true Chr02: 61647059-61650112 Sorghum bicolor
Sobic.002G224700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 61649113-61650112 Sorghum bicolor
Sobic.002G224700 2.0kb upstream 2.0kb upstream 4054 true Chr02: 61645059-61649112 Sorghum bicolor
Sobic.002G224700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 61645059-61647058 Sorghum bicolor
Sobic.002G224700 2.0kb downstream 2.0kb downstream 4054 true Chr02: 61647059-61651112 Sorghum bicolor
Sobic.002G224700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 61649113-61651112 Sorghum bicolor
Sobic.002G224700 5.0kb upstream 5.0kb upstream 7054 true Chr02: 61642059-61649112 Sorghum bicolor
Sobic.002G224700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 61642059-61647058 Sorghum bicolor
Sobic.002G224700 5.0kb downstream 5.0kb downstream 7054 true Chr02: 61647059-61654112 Sorghum bicolor
Sobic.002G224700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 61649113-61654112 Sorghum bicolor
Sobic.002G224700 10.0kb upstream 10.0kb upstream 12054 true Chr02: 61637059-61649112 Sorghum bicolor
Sobic.002G224700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 61637059-61647058 Sorghum bicolor
Sobic.002G224700 10.0kb downstream 10.0kb downstream 12054 true Chr02: 61647059-61659112 Sorghum bicolor
Sobic.002G224700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 61649113-61659112 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180120 5267 Panicoideae View MSA
124568660 5269 Grass View MSA
122046016 5273 Angiosperm View MSA
121348345 5274 Embryophyte View MSA
123426799 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.634     High  
cufflinks 6.788     High Low
cufflinks 8.714       Low
cufflinks 12.821     High  
cufflinks 14.123     High  
cufflinks 18.937     High  
cufflinks 11.916     High  
cufflinks 8.533       Low
cufflinks 15.887     High  
cufflinks 14.875     High  
cufflinks 12.518     High  
cufflinks 15.457     High  
cufflinks 12.932     High  
cufflinks 15.575     High  
cufflinks 16.221     High  
cufflinks 16.874     High  
cufflinks 13.28     High  
cufflinks 12.044     High  
cufflinks 22.45     High High
cufflinks 15.889     High  
cufflinks 32.064     High High
cufflinks 12.582     High  
cufflinks 14.886     High  
cufflinks 14.578     High  
cufflinks 8.987     High Low
cufflinks 4.728       Low
cufflinks 9.719        
cufflinks 39.459     High High
cufflinks 13.648     High  
cufflinks 18.216     High  

0 Strain