Gene : Sobic.002G352100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR21649//PTHR21649:SF13 - CHLOROPHYLL A/B BINDING PROTEIN // LHCA2 PROTEIN Genomic Order:  3603
Name:  ? Sobic.002G352100 Secondary Identifier:  ? PAC:37950176
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G352100 0.5kb upstream 0.5kb upstream 2306 true Chr02: 71555802-71558107 Sorghum bicolor
Sobic.002G352100 0.5kb upstream 0.5kb upstream 500 false Chr02: 71555802-71556301 Sorghum bicolor
Sobic.002G352100 0.5kb downstream 0.5kb downstream 2306 true Chr02: 71556302-71558607 Sorghum bicolor
Sobic.002G352100 0.5kb downstream 0.5kb downstream 500 false Chr02: 71558108-71558607 Sorghum bicolor
Sobic.002G352100 1.0kb upstream 1.0kb upstream 2806 true Chr02: 71555302-71558107 Sorghum bicolor
Sobic.002G352100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 71555302-71556301 Sorghum bicolor
Sobic.002G352100 1.0kb downstream 1.0kb downstream 2806 true Chr02: 71556302-71559107 Sorghum bicolor
Sobic.002G352100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 71558108-71559107 Sorghum bicolor
Sobic.002G352100 2.0kb upstream 2.0kb upstream 3806 true Chr02: 71554302-71558107 Sorghum bicolor
Sobic.002G352100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 71554302-71556301 Sorghum bicolor
Sobic.002G352100 2.0kb downstream 2.0kb downstream 3806 true Chr02: 71556302-71560107 Sorghum bicolor
Sobic.002G352100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 71558108-71560107 Sorghum bicolor
Sobic.002G352100 5.0kb upstream 5.0kb upstream 6806 true Chr02: 71551302-71558107 Sorghum bicolor
Sobic.002G352100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 71551302-71556301 Sorghum bicolor
Sobic.002G352100 5.0kb downstream 5.0kb downstream 6806 true Chr02: 71556302-71563107 Sorghum bicolor
Sobic.002G352100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 71558108-71563107 Sorghum bicolor
Sobic.002G352100 10.0kb upstream 10.0kb upstream 11806 true Chr02: 71546302-71558107 Sorghum bicolor
Sobic.002G352100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 71546302-71556301 Sorghum bicolor
Sobic.002G352100 10.0kb downstream 10.0kb downstream 11806 true Chr02: 71556302-71568107 Sorghum bicolor
Sobic.002G352100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 71558108-71568107 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186656 5267 Panicoideae View MSA
124586394 5269 Grass View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.441     High  
cufflinks 576.886     High High
cufflinks 56.859     High  
cufflinks 40.195     High  
cufflinks 1.482        
cufflinks 40.947     High  
cufflinks 108.29     High  
cufflinks 880.15     High High
cufflinks 2.432        
cufflinks 1.658        
cufflinks 0.277       Low
cufflinks 0.326        
cufflinks 5.337        
cufflinks 0.269       Low
cufflinks 10.978        
cufflinks 217.75     High High
cufflinks 122.903     High  
cufflinks 70.855     High  
cufflinks 381.123     High High
cufflinks 86.72     High  
cufflinks 0.446        
cufflinks 0.056     Low Low
cufflinks 0.111       Low
cufflinks 0.211       Low
cufflinks 188.193     High High
cufflinks 855.022     High High
cufflinks 0.242       Low
cufflinks 0.474        
cufflinks 233.31     High High
cufflinks 6.365        

0 Strain