Gene : Sobic.006G095700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11999//PTHR11999:SF81 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE // SUBFAMILY NOT NAMED Genomic Order:  993
Name:  ? Sobic.006G095700 Secondary Identifier:  ? PAC:37945611
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLUDEG-I-PWY Sorghum bicolor pathologic  
Sbicolor PWY0-1305 Sorghum bicolor pathologic  
Sbicolor PWY-4321 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G095700 0.5kb upstream 0.5kb upstream 3390 true Chr06: 46573968-46577357 Sorghum bicolor
Sobic.006G095700 0.5kb upstream 0.5kb upstream 500 false Chr06: 46576858-46577357 Sorghum bicolor
Sobic.006G095700 0.5kb downstream 0.5kb downstream 3390 true Chr06: 46573468-46576857 Sorghum bicolor
Sobic.006G095700 0.5kb downstream 0.5kb downstream 500 false Chr06: 46573468-46573967 Sorghum bicolor
Sobic.006G095700 1.0kb upstream 1.0kb upstream 3890 true Chr06: 46573968-46577857 Sorghum bicolor
Sobic.006G095700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 46576858-46577857 Sorghum bicolor
Sobic.006G095700 1.0kb downstream 1.0kb downstream 3890 true Chr06: 46572968-46576857 Sorghum bicolor
Sobic.006G095700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 46572968-46573967 Sorghum bicolor
Sobic.006G095700 2.0kb upstream 2.0kb upstream 4890 true Chr06: 46573968-46578857 Sorghum bicolor
Sobic.006G095700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 46576858-46578857 Sorghum bicolor
Sobic.006G095700 2.0kb downstream 2.0kb downstream 4890 true Chr06: 46571968-46576857 Sorghum bicolor
Sobic.006G095700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 46571968-46573967 Sorghum bicolor
Sobic.006G095700 5.0kb upstream 5.0kb upstream 7890 true Chr06: 46573968-46581857 Sorghum bicolor
Sobic.006G095700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 46576858-46581857 Sorghum bicolor
Sobic.006G095700 5.0kb downstream 5.0kb downstream 7890 true Chr06: 46568968-46576857 Sorghum bicolor
Sobic.006G095700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 46568968-46573967 Sorghum bicolor
Sobic.006G095700 10.0kb upstream 10.0kb upstream 12890 true Chr06: 46573968-46586857 Sorghum bicolor
Sobic.006G095700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 46576858-46586857 Sorghum bicolor
Sobic.006G095700 10.0kb downstream 10.0kb downstream 12890 true Chr06: 46563968-46576857 Sorghum bicolor
Sobic.006G095700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 46563968-46573967 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175563 5267 Panicoideae View MSA
124577690 5269 Grass View MSA
122050334 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.081     Low Low
cufflinks 0.114        
cufflinks 0.154        
cufflinks 0.059     Low Low
cufflinks 0.398        
cufflinks 0.032     Low Low
cufflinks 0.908        
cufflinks 1.085        
cufflinks 0.175        
cufflinks 0.166        
cufflinks 1.907       High
cufflinks 0.686        
cufflinks 0.588        
cufflinks 1.888       High
cufflinks 18.339     High High
cufflinks 0.088       Low
cufflinks 0.718        
cufflinks 0.842        
cufflinks 0.06     Low Low
cufflinks 0.674        
cufflinks 0.347        
cufflinks 0.854        
cufflinks 1.012        
cufflinks 0.948        
cufflinks 0.157        
cufflinks 0.137        
cufflinks 1.055        
cufflinks 0.037     Low Low
cufflinks 1.845       High
cufflinks 0.524        

0 Strain