Gene : Sobic.002G339800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23336//PTHR23336:SF25 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // SUBFAMILY NOT NAMED Genomic Order:  3478
Name:  ? Sobic.002G339800 Secondary Identifier:  ? PAC:37951470
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G339800 0.5kb upstream 0.5kb upstream 9425 true Chr02: 70686151-70695575 Sorghum bicolor
Sobic.002G339800 0.5kb upstream 0.5kb upstream 500 false Chr02: 70686151-70686650 Sorghum bicolor
Sobic.002G339800 0.5kb downstream 0.5kb downstream 9425 true Chr02: 70686651-70696075 Sorghum bicolor
Sobic.002G339800 0.5kb downstream 0.5kb downstream 500 false Chr02: 70695576-70696075 Sorghum bicolor
Sobic.002G339800 1.0kb upstream 1.0kb upstream 9925 true Chr02: 70685651-70695575 Sorghum bicolor
Sobic.002G339800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 70685651-70686650 Sorghum bicolor
Sobic.002G339800 1.0kb downstream 1.0kb downstream 9925 true Chr02: 70686651-70696575 Sorghum bicolor
Sobic.002G339800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 70695576-70696575 Sorghum bicolor
Sobic.002G339800 2.0kb upstream 2.0kb upstream 10925 true Chr02: 70684651-70695575 Sorghum bicolor
Sobic.002G339800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 70684651-70686650 Sorghum bicolor
Sobic.002G339800 2.0kb downstream 2.0kb downstream 10925 true Chr02: 70686651-70697575 Sorghum bicolor
Sobic.002G339800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 70695576-70697575 Sorghum bicolor
Sobic.002G339800 5.0kb upstream 5.0kb upstream 13925 true Chr02: 70681651-70695575 Sorghum bicolor
Sobic.002G339800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 70681651-70686650 Sorghum bicolor
Sobic.002G339800 5.0kb downstream 5.0kb downstream 13925 true Chr02: 70686651-70700575 Sorghum bicolor
Sobic.002G339800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 70695576-70700575 Sorghum bicolor
Sobic.002G339800 10.0kb upstream 10.0kb upstream 18925 true Chr02: 70676651-70695575 Sorghum bicolor
Sobic.002G339800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 70676651-70686650 Sorghum bicolor
Sobic.002G339800 10.0kb downstream 10.0kb downstream 18925 true Chr02: 70686651-70705575 Sorghum bicolor
Sobic.002G339800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 70695576-70705575 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187846 5267 Panicoideae View MSA
124573908 5269 Grass View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.51        
cufflinks 0.812       Low
cufflinks 1.235       Low
cufflinks 1.98        
cufflinks 5.974       High
cufflinks 2.645        
cufflinks 1.772        
cufflinks 1.335       Low
cufflinks 4.915        
cufflinks 5.568        
cufflinks 5.868       High
cufflinks 5.405        
cufflinks 4.44        
cufflinks 3.921        
cufflinks 3.998        
cufflinks 0.981       Low
cufflinks 1.678        
cufflinks 1.754        
cufflinks 2.342        
cufflinks 2.277        
cufflinks 7.368       High
cufflinks 3.1        
cufflinks 3.781        
cufflinks 3.709        
cufflinks 1.245       Low
cufflinks 0.749       Low
cufflinks 8.541       High
cufflinks 2.267        
cufflinks 2.479        
cufflinks 5.691       High

0 Strain