Gene : Sobic.002G339500 S. bicolor v3.1.1
Defline:  (1 of 3) K04718 - sphingosine kinase (SPHK) Genomic Order:  3474
Name:  ? Sobic.002G339500 Secondary Identifier:  ? PAC:37953032
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5129 Sorghum bicolor pathologic  
Sbicolor PWY-6483 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G339500 0.5kb upstream 0.5kb upstream 5022 true Chr02: 70666672-70671693 Sorghum bicolor
Sobic.002G339500 0.5kb upstream 0.5kb upstream 500 false Chr02: 70666672-70667171 Sorghum bicolor
Sobic.002G339500 0.5kb downstream 0.5kb downstream 5022 true Chr02: 70667172-70672193 Sorghum bicolor
Sobic.002G339500 0.5kb downstream 0.5kb downstream 500 false Chr02: 70671694-70672193 Sorghum bicolor
Sobic.002G339500 1.0kb upstream 1.0kb upstream 5522 true Chr02: 70666172-70671693 Sorghum bicolor
Sobic.002G339500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 70666172-70667171 Sorghum bicolor
Sobic.002G339500 1.0kb downstream 1.0kb downstream 5522 true Chr02: 70667172-70672693 Sorghum bicolor
Sobic.002G339500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 70671694-70672693 Sorghum bicolor
Sobic.002G339500 2.0kb upstream 2.0kb upstream 6522 true Chr02: 70665172-70671693 Sorghum bicolor
Sobic.002G339500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 70665172-70667171 Sorghum bicolor
Sobic.002G339500 2.0kb downstream 2.0kb downstream 6522 true Chr02: 70667172-70673693 Sorghum bicolor
Sobic.002G339500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 70671694-70673693 Sorghum bicolor
Sobic.002G339500 5.0kb upstream 5.0kb upstream 9522 true Chr02: 70662172-70671693 Sorghum bicolor
Sobic.002G339500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 70662172-70667171 Sorghum bicolor
Sobic.002G339500 5.0kb downstream 5.0kb downstream 9522 true Chr02: 70667172-70676693 Sorghum bicolor
Sobic.002G339500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 70671694-70676693 Sorghum bicolor
Sobic.002G339500 10.0kb upstream 10.0kb upstream 14522 true Chr02: 70657172-70671693 Sorghum bicolor
Sobic.002G339500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 70657172-70667171 Sorghum bicolor
Sobic.002G339500 10.0kb downstream 10.0kb downstream 14522 true Chr02: 70667172-70681693 Sorghum bicolor
Sobic.002G339500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 70671694-70681693 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184562 5267 Panicoideae View MSA
124586280 5269 Grass View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.392       Low
cufflinks 3.92       Low
cufflinks 6.548        
cufflinks 8.688        
cufflinks 3.179       Low
cufflinks 8.786        
cufflinks 5.896        
cufflinks 6.654        
cufflinks 6.21        
cufflinks 6.802        
cufflinks 16.565     High High
cufflinks 24.583     High High
cufflinks 5.835        
cufflinks 21.109     High High
cufflinks 6.085        
cufflinks 7.579        
cufflinks 5.142        
cufflinks 5.053        
cufflinks 5.269        
cufflinks 8.309        
cufflinks 2.954       Low
cufflinks 15.837     High High
cufflinks 17.399     High High
cufflinks 16.781     High High
cufflinks 5.904        
cufflinks 4.271        
cufflinks 18.082     High High
cufflinks 2.659       Low
cufflinks 6.104        
cufflinks 5.935        

0 Strain