Gene : Sobic.002G338000 S. bicolor v3.1.1
Defline:  (1 of 1) K08915 - light-harvesting complex II chlorophyll a/b binding protein 4 (LHCB4) Genomic Order:  3456
Name:  ? Sobic.002G338000 Secondary Identifier:  ? PAC:37951585
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G338000 0.5kb upstream 0.5kb upstream 1885 true Chr02: 70530638-70532522 Sorghum bicolor
Sobic.002G338000 0.5kb upstream 0.5kb upstream 500 false Chr02: 70532023-70532522 Sorghum bicolor
Sobic.002G338000 0.5kb downstream 0.5kb downstream 1885 true Chr02: 70530138-70532022 Sorghum bicolor
Sobic.002G338000 0.5kb downstream 0.5kb downstream 500 false Chr02: 70530138-70530637 Sorghum bicolor
Sobic.002G338000 1.0kb upstream 1.0kb upstream 2385 true Chr02: 70530638-70533022 Sorghum bicolor
Sobic.002G338000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 70532023-70533022 Sorghum bicolor
Sobic.002G338000 1.0kb downstream 1.0kb downstream 2385 true Chr02: 70529638-70532022 Sorghum bicolor
Sobic.002G338000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 70529638-70530637 Sorghum bicolor
Sobic.002G338000 2.0kb upstream 2.0kb upstream 3385 true Chr02: 70530638-70534022 Sorghum bicolor
Sobic.002G338000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 70532023-70534022 Sorghum bicolor
Sobic.002G338000 2.0kb downstream 2.0kb downstream 3385 true Chr02: 70528638-70532022 Sorghum bicolor
Sobic.002G338000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 70528638-70530637 Sorghum bicolor
Sobic.002G338000 5.0kb upstream 5.0kb upstream 6385 true Chr02: 70530638-70537022 Sorghum bicolor
Sobic.002G338000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 70532023-70537022 Sorghum bicolor
Sobic.002G338000 5.0kb downstream 5.0kb downstream 6385 true Chr02: 70525638-70532022 Sorghum bicolor
Sobic.002G338000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 70525638-70530637 Sorghum bicolor
Sobic.002G338000 10.0kb upstream 10.0kb upstream 11385 true Chr02: 70530638-70542022 Sorghum bicolor
Sobic.002G338000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 70532023-70542022 Sorghum bicolor
Sobic.002G338000 10.0kb downstream 10.0kb downstream 11385 true Chr02: 70520638-70532022 Sorghum bicolor
Sobic.002G338000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 70520638-70530637 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186425 5267 Panicoideae View MSA
124577958 5269 Grass View MSA
122044716 5273 Angiosperm View MSA
121345249 5274 Embryophyte View MSA
123428168 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.073     High  
cufflinks 2309.113     High High
cufflinks 100.588     High  
cufflinks 29.326     High  
cufflinks 9.172        
cufflinks 95.365     High  
cufflinks 526.803     High High
cufflinks 3318.525     High High
cufflinks 4.281        
cufflinks 3.784        
cufflinks 1.511        
cufflinks 1.179       Low
cufflinks 13.211     High  
cufflinks 1.072       Low
cufflinks 33.73     High  
cufflinks 428.28     High High
cufflinks 500.286     High High
cufflinks 334.717     High  
cufflinks 765.695     High High
cufflinks 312.252     High  
cufflinks 2.433        
cufflinks 0.791       Low
cufflinks 0.6       Low
cufflinks 1.372        
cufflinks 405.278     High High
cufflinks 2477.906     High High
cufflinks 0.498       Low
cufflinks 0.523       Low
cufflinks 1069.859     High High
cufflinks 26.867     High  

0 Strain