Gene : Sobic.006G105800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11766:SF0 - TYROSINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  1098
Name:  ? Sobic.006G105800 Secondary Identifier:  ? PAC:37948194
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G105800 0.5kb upstream 0.5kb upstream 2224 true Chr06: 47592039-47594262 Sorghum bicolor
Sobic.006G105800 0.5kb upstream 0.5kb upstream 500 false Chr06: 47593763-47594262 Sorghum bicolor
Sobic.006G105800 0.5kb downstream 0.5kb downstream 2224 true Chr06: 47591539-47593762 Sorghum bicolor
Sobic.006G105800 0.5kb downstream 0.5kb downstream 500 false Chr06: 47591539-47592038 Sorghum bicolor
Sobic.006G105800 1.0kb upstream 1.0kb upstream 2724 true Chr06: 47592039-47594762 Sorghum bicolor
Sobic.006G105800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 47593763-47594762 Sorghum bicolor
Sobic.006G105800 1.0kb downstream 1.0kb downstream 2724 true Chr06: 47591039-47593762 Sorghum bicolor
Sobic.006G105800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 47591039-47592038 Sorghum bicolor
Sobic.006G105800 2.0kb upstream 2.0kb upstream 3724 true Chr06: 47592039-47595762 Sorghum bicolor
Sobic.006G105800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 47593763-47595762 Sorghum bicolor
Sobic.006G105800 2.0kb downstream 2.0kb downstream 3724 true Chr06: 47590039-47593762 Sorghum bicolor
Sobic.006G105800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 47590039-47592038 Sorghum bicolor
Sobic.006G105800 5.0kb upstream 5.0kb upstream 6724 true Chr06: 47592039-47598762 Sorghum bicolor
Sobic.006G105800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 47593763-47598762 Sorghum bicolor
Sobic.006G105800 5.0kb downstream 5.0kb downstream 6724 true Chr06: 47587039-47593762 Sorghum bicolor
Sobic.006G105800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 47587039-47592038 Sorghum bicolor
Sobic.006G105800 10.0kb upstream 10.0kb upstream 11724 true Chr06: 47592039-47603762 Sorghum bicolor
Sobic.006G105800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 47593763-47603762 Sorghum bicolor
Sobic.006G105800 10.0kb downstream 10.0kb downstream 11724 true Chr06: 47582039-47593762 Sorghum bicolor
Sobic.006G105800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 47582039-47592038 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189928 5267 Panicoideae View MSA
124584962 5269 Grass View MSA
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.876     High High
cufflinks 14.958     High High
cufflinks 14.134     High High
cufflinks 6.668        
cufflinks 6.521        
cufflinks 8.102        
cufflinks 13.773     High High
cufflinks 7.923        
cufflinks 4.305        
cufflinks 3.62       Low
cufflinks 3.101       Low
cufflinks 3.217       Low
cufflinks 4.903        
cufflinks 4.069        
cufflinks 7.242        
cufflinks 13.299     High High
cufflinks 11.072       High
cufflinks 15.97     High High
cufflinks 15.624     High High
cufflinks 8.784        
cufflinks 6.839        
cufflinks 4.291        
cufflinks 3.783        
cufflinks 4.072        
cufflinks 8.705     High  
cufflinks 13.134     High High
cufflinks 2.564       Low
cufflinks 2.652       Low
cufflinks 12.513     High High
cufflinks 8.548        

0 Strain