Gene : Sobic.006G106400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22939//PTHR22939:SF99 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 8, CHLOROPLASTIC Genomic Order:  1104
Name:  ? Sobic.006G106400 Secondary Identifier:  ? PAC:37946696
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G106400 0.5kb upstream 0.5kb upstream 6381 true Chr06: 47618657-47625037 Sorghum bicolor
Sobic.006G106400 0.5kb upstream 0.5kb upstream 500 false Chr06: 47618657-47619156 Sorghum bicolor
Sobic.006G106400 0.5kb downstream 0.5kb downstream 6381 true Chr06: 47619157-47625537 Sorghum bicolor
Sobic.006G106400 0.5kb downstream 0.5kb downstream 500 false Chr06: 47625038-47625537 Sorghum bicolor
Sobic.006G106400 1.0kb upstream 1.0kb upstream 6881 true Chr06: 47618157-47625037 Sorghum bicolor
Sobic.006G106400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 47618157-47619156 Sorghum bicolor
Sobic.006G106400 1.0kb downstream 1.0kb downstream 6881 true Chr06: 47619157-47626037 Sorghum bicolor
Sobic.006G106400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 47625038-47626037 Sorghum bicolor
Sobic.006G106400 2.0kb upstream 2.0kb upstream 7881 true Chr06: 47617157-47625037 Sorghum bicolor
Sobic.006G106400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 47617157-47619156 Sorghum bicolor
Sobic.006G106400 2.0kb downstream 2.0kb downstream 7881 true Chr06: 47619157-47627037 Sorghum bicolor
Sobic.006G106400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 47625038-47627037 Sorghum bicolor
Sobic.006G106400 5.0kb upstream 5.0kb upstream 10881 true Chr06: 47614157-47625037 Sorghum bicolor
Sobic.006G106400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 47614157-47619156 Sorghum bicolor
Sobic.006G106400 5.0kb downstream 5.0kb downstream 10881 true Chr06: 47619157-47630037 Sorghum bicolor
Sobic.006G106400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 47625038-47630037 Sorghum bicolor
Sobic.006G106400 10.0kb upstream 10.0kb upstream 15881 true Chr06: 47609157-47625037 Sorghum bicolor
Sobic.006G106400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 47609157-47619156 Sorghum bicolor
Sobic.006G106400 10.0kb downstream 10.0kb downstream 15881 true Chr06: 47619157-47635037 Sorghum bicolor
Sobic.006G106400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 47625038-47635037 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177237 5267 Panicoideae View MSA
124573602 5269 Grass View MSA
122041549 5273 Angiosperm View MSA
121347580 5274 Embryophyte View MSA
123424276 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.311       Low
cufflinks 8.921     High  
cufflinks 6.708        
cufflinks 4.34        
cufflinks 3.501        
cufflinks 9.871        
cufflinks 10.594       High
cufflinks 14.549     High High
cufflinks 4.271        
cufflinks 5.293        
cufflinks 0.731       Low
cufflinks 0.701       Low
cufflinks 6.836        
cufflinks 0.333       Low
cufflinks 5.384        
cufflinks 8.841        
cufflinks 10.174        
cufflinks 11.896     High High
cufflinks 5.94        
cufflinks 6.421        
cufflinks 5.294        
cufflinks 0.745       Low
cufflinks 0.58       Low
cufflinks 0.583       Low
cufflinks 5.044        
cufflinks 9.116     High  
cufflinks 0.861       Low
cufflinks 0.219       Low
cufflinks 19.509     High High
cufflinks 5.605        

0 Strain