Gene : Sobic.002G315800 S. bicolor v3.1.1
Defline:  (1 of 1) 3.4.22.1 - Cathepsin B / Cathepsin B1 Genomic Order:  3236
Name:  ? Sobic.002G315800 Secondary Identifier:  ? PAC:37949717
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G315800 0.5kb upstream 0.5kb upstream 4511 true Chr02: 68918539-68923049 Sorghum bicolor
Sobic.002G315800 0.5kb upstream 0.5kb upstream 500 false Chr02: 68922550-68923049 Sorghum bicolor
Sobic.002G315800 0.5kb downstream 0.5kb downstream 4511 true Chr02: 68918039-68922549 Sorghum bicolor
Sobic.002G315800 0.5kb downstream 0.5kb downstream 500 false Chr02: 68918039-68918538 Sorghum bicolor
Sobic.002G315800 1.0kb upstream 1.0kb upstream 5011 true Chr02: 68918539-68923549 Sorghum bicolor
Sobic.002G315800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 68922550-68923549 Sorghum bicolor
Sobic.002G315800 1.0kb downstream 1.0kb downstream 5011 true Chr02: 68917539-68922549 Sorghum bicolor
Sobic.002G315800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 68917539-68918538 Sorghum bicolor
Sobic.002G315800 2.0kb upstream 2.0kb upstream 6011 true Chr02: 68918539-68924549 Sorghum bicolor
Sobic.002G315800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 68922550-68924549 Sorghum bicolor
Sobic.002G315800 2.0kb downstream 2.0kb downstream 6011 true Chr02: 68916539-68922549 Sorghum bicolor
Sobic.002G315800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 68916539-68918538 Sorghum bicolor
Sobic.002G315800 5.0kb upstream 5.0kb upstream 9011 true Chr02: 68918539-68927549 Sorghum bicolor
Sobic.002G315800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 68922550-68927549 Sorghum bicolor
Sobic.002G315800 5.0kb downstream 5.0kb downstream 9011 true Chr02: 68913539-68922549 Sorghum bicolor
Sobic.002G315800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 68913539-68918538 Sorghum bicolor
Sobic.002G315800 10.0kb upstream 10.0kb upstream 14011 true Chr02: 68918539-68932549 Sorghum bicolor
Sobic.002G315800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 68922550-68932549 Sorghum bicolor
Sobic.002G315800 10.0kb downstream 10.0kb downstream 14011 true Chr02: 68908539-68922549 Sorghum bicolor
Sobic.002G315800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 68908539-68918538 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197653 5267 Panicoideae View MSA
124576607 5269 Grass View MSA
122041719 5273 Angiosperm View MSA
121345003 5274 Embryophyte View MSA
123427014 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.045     High High
cufflinks 2.268       Low
cufflinks 8.678        
cufflinks 19.593     High  
cufflinks 7.228        
cufflinks 6.505        
cufflinks 10.546        
cufflinks 4.977       Low
cufflinks 13.893     High  
cufflinks 15.207     High  
cufflinks 24.035     High  
cufflinks 30.383     High High
cufflinks 10.852        
cufflinks 27.007     High High
cufflinks 16.105     High  
cufflinks 6.86        
cufflinks 10.651        
cufflinks 11.191        
cufflinks 3.487       Low
cufflinks 20.233     High  
cufflinks 8.983        
cufflinks 18.96     High  
cufflinks 28.207     High High
cufflinks 26.737     High High
cufflinks 4.392       Low
cufflinks 2.366       Low
cufflinks 24.293     High  
cufflinks 50.399     High High
cufflinks 8.455        
cufflinks 14.312     High  

0 Strain