Gene : Sobic.002G314100 S. bicolor v3.1.1
Defline:  (1 of 3) 2.1.1.183 - 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase Genomic Order:  3219
Name:  ? Sobic.002G314100 Secondary Identifier:  ? PAC:37951215
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G314100 0.5kb upstream 0.5kb upstream 1954 true Chr02: 68778771-68780724 Sorghum bicolor
Sobic.002G314100 0.5kb upstream 0.5kb upstream 500 false Chr02: 68778771-68779270 Sorghum bicolor
Sobic.002G314100 0.5kb downstream 0.5kb downstream 1954 true Chr02: 68779271-68781224 Sorghum bicolor
Sobic.002G314100 0.5kb downstream 0.5kb downstream 500 false Chr02: 68780725-68781224 Sorghum bicolor
Sobic.002G314100 1.0kb upstream 1.0kb upstream 2454 true Chr02: 68778271-68780724 Sorghum bicolor
Sobic.002G314100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 68778271-68779270 Sorghum bicolor
Sobic.002G314100 1.0kb downstream 1.0kb downstream 2454 true Chr02: 68779271-68781724 Sorghum bicolor
Sobic.002G314100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 68780725-68781724 Sorghum bicolor
Sobic.002G314100 2.0kb upstream 2.0kb upstream 3454 true Chr02: 68777271-68780724 Sorghum bicolor
Sobic.002G314100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 68777271-68779270 Sorghum bicolor
Sobic.002G314100 2.0kb downstream 2.0kb downstream 3454 true Chr02: 68779271-68782724 Sorghum bicolor
Sobic.002G314100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 68780725-68782724 Sorghum bicolor
Sobic.002G314100 5.0kb upstream 5.0kb upstream 6454 true Chr02: 68774271-68780724 Sorghum bicolor
Sobic.002G314100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 68774271-68779270 Sorghum bicolor
Sobic.002G314100 5.0kb downstream 5.0kb downstream 6454 true Chr02: 68779271-68785724 Sorghum bicolor
Sobic.002G314100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 68780725-68785724 Sorghum bicolor
Sobic.002G314100 10.0kb upstream 10.0kb upstream 11454 true Chr02: 68769271-68780724 Sorghum bicolor
Sobic.002G314100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 68769271-68779270 Sorghum bicolor
Sobic.002G314100 10.0kb downstream 10.0kb downstream 11454 true Chr02: 68779271-68790724 Sorghum bicolor
Sobic.002G314100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 68780725-68790724 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179939 5267 Panicoideae View MSA
124578915 5269 Grass View MSA
122047776 5273 Angiosperm View MSA
121351235 5274 Embryophyte View MSA
123426456 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.611       High
cufflinks 0.099       Low
cufflinks 0.139       Low
cufflinks 0.113       Low
cufflinks 0.688        
cufflinks 0.341        
cufflinks 0.342        
cufflinks 0.184        
cufflinks 0.204        
cufflinks 0.247        
cufflinks 0.473        
cufflinks 0.268        
cufflinks 0.182        
cufflinks 0.296        
cufflinks 0.186        
cufflinks 0.214        
cufflinks 0.48        
cufflinks 0.363        
cufflinks 0.062     Low Low
cufflinks 0.187        
cufflinks 0.567        
cufflinks 0.867       High
cufflinks 0.565        
cufflinks 0.574        
cufflinks 0.189        
cufflinks 0.109       Low
cufflinks 0.153        
cufflinks 1.027       High
cufflinks 0.178        
cufflinks 0.262        

0 Strain