Gene : Sobic.006G116000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23344//PTHR23344:SF29 - GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE // SUBFAMILY NOT NAMED Genomic Order:  1206
Name:  ? Sobic.006G116000 Secondary Identifier:  ? PAC:37949330
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7409 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G116000 0.5kb upstream 0.5kb upstream 6772 true Chr06: 48378145-48384916 Sorghum bicolor
Sobic.006G116000 0.5kb upstream 0.5kb upstream 500 false Chr06: 48378145-48378644 Sorghum bicolor
Sobic.006G116000 0.5kb downstream 0.5kb downstream 6772 true Chr06: 48378645-48385416 Sorghum bicolor
Sobic.006G116000 0.5kb downstream 0.5kb downstream 500 false Chr06: 48384917-48385416 Sorghum bicolor
Sobic.006G116000 1.0kb upstream 1.0kb upstream 7272 true Chr06: 48377645-48384916 Sorghum bicolor
Sobic.006G116000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 48377645-48378644 Sorghum bicolor
Sobic.006G116000 1.0kb downstream 1.0kb downstream 7272 true Chr06: 48378645-48385916 Sorghum bicolor
Sobic.006G116000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 48384917-48385916 Sorghum bicolor
Sobic.006G116000 2.0kb upstream 2.0kb upstream 8272 true Chr06: 48376645-48384916 Sorghum bicolor
Sobic.006G116000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 48376645-48378644 Sorghum bicolor
Sobic.006G116000 2.0kb downstream 2.0kb downstream 8272 true Chr06: 48378645-48386916 Sorghum bicolor
Sobic.006G116000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 48384917-48386916 Sorghum bicolor
Sobic.006G116000 5.0kb upstream 5.0kb upstream 11272 true Chr06: 48373645-48384916 Sorghum bicolor
Sobic.006G116000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 48373645-48378644 Sorghum bicolor
Sobic.006G116000 5.0kb downstream 5.0kb downstream 11272 true Chr06: 48378645-48389916 Sorghum bicolor
Sobic.006G116000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 48384917-48389916 Sorghum bicolor
Sobic.006G116000 10.0kb upstream 10.0kb upstream 16272 true Chr06: 48368645-48384916 Sorghum bicolor
Sobic.006G116000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 48368645-48378644 Sorghum bicolor
Sobic.006G116000 10.0kb downstream 10.0kb downstream 16272 true Chr06: 48378645-48394916 Sorghum bicolor
Sobic.006G116000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 48384917-48394916 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179127 5267 Panicoideae View MSA
124571074 5269 Grass View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.476        
cufflinks 1.052        
cufflinks 0.366       Low
cufflinks 0.551       Low
cufflinks 32.778     High High
cufflinks 2.129        
cufflinks 8.942        
cufflinks 5.781        
cufflinks 1.237        
cufflinks 3.009        
cufflinks 2.611        
cufflinks 2.526        
cufflinks 8.034        
cufflinks 4.216        
cufflinks 15.666     High  
cufflinks 1.074        
cufflinks 8.67        
cufflinks 9.371        
cufflinks 3.438        
cufflinks 7.515        
cufflinks 28.874     High High
cufflinks 4.068        
cufflinks 3.592        
cufflinks 4.204        
cufflinks 0.774       Low
cufflinks 2.093        
cufflinks 1.9        
cufflinks 0.011     Low Low
cufflinks 4.31        
cufflinks 22.649     High High

0 Strain