Gene : Sobic.002G292600 S. bicolor v3.1.1
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  3001
Name:  ? Sobic.002G292600 Secondary Identifier:  ? PAC:37951689
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CAROTENOID-PWY Sorghum bicolor pathologic  
Sbicolor PWY-6475 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G292600 0.5kb upstream 0.5kb upstream 3224 true Chr02: 67031565-67034788 Sorghum bicolor
Sobic.002G292600 0.5kb upstream 0.5kb upstream 500 false Chr02: 67034289-67034788 Sorghum bicolor
Sobic.002G292600 0.5kb downstream 0.5kb downstream 3224 true Chr02: 67031065-67034288 Sorghum bicolor
Sobic.002G292600 0.5kb downstream 0.5kb downstream 500 false Chr02: 67031065-67031564 Sorghum bicolor
Sobic.002G292600 1.0kb upstream 1.0kb upstream 3724 true Chr02: 67031565-67035288 Sorghum bicolor
Sobic.002G292600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 67034289-67035288 Sorghum bicolor
Sobic.002G292600 1.0kb downstream 1.0kb downstream 3724 true Chr02: 67030565-67034288 Sorghum bicolor
Sobic.002G292600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 67030565-67031564 Sorghum bicolor
Sobic.002G292600 2.0kb upstream 2.0kb upstream 4724 true Chr02: 67031565-67036288 Sorghum bicolor
Sobic.002G292600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 67034289-67036288 Sorghum bicolor
Sobic.002G292600 2.0kb downstream 2.0kb downstream 4724 true Chr02: 67029565-67034288 Sorghum bicolor
Sobic.002G292600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 67029565-67031564 Sorghum bicolor
Sobic.002G292600 5.0kb upstream 5.0kb upstream 7724 true Chr02: 67031565-67039288 Sorghum bicolor
Sobic.002G292600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 67034289-67039288 Sorghum bicolor
Sobic.002G292600 5.0kb downstream 5.0kb downstream 7724 true Chr02: 67026565-67034288 Sorghum bicolor
Sobic.002G292600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 67026565-67031564 Sorghum bicolor
Sobic.002G292600 10.0kb upstream 10.0kb upstream 12724 true Chr02: 67031565-67044288 Sorghum bicolor
Sobic.002G292600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 67034289-67044288 Sorghum bicolor
Sobic.002G292600 10.0kb downstream 10.0kb downstream 12724 true Chr02: 67021565-67034288 Sorghum bicolor
Sobic.002G292600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 67021565-67031564 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993341 5273 Angiosperm View MSA
122176655 5267 Panicoideae View MSA
124577513 5269 Grass View MSA
121263628 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.855        
cufflinks 2.045       Low
cufflinks 3.983        
cufflinks 19.763     High High
cufflinks 21.308     High High
cufflinks 47.244     High High
cufflinks 1.386       Low
cufflinks 2.747        
cufflinks 12.295        
cufflinks 11.853     High  
cufflinks 2.824        
cufflinks 6.162        
cufflinks 21.036     High High
cufflinks 3.739        
cufflinks 6.466        
cufflinks 9.675        
cufflinks 1.485       Low
cufflinks 1.054       Low
cufflinks 13.125     High  
cufflinks 2.814        
cufflinks 3.361        
cufflinks 3.689        
cufflinks 2.684        
cufflinks 2.8        
cufflinks 8.34        
cufflinks 2.478        
cufflinks 7.505        
cufflinks 3.046        
cufflinks 2.297        
cufflinks 4.897        

0 Strain