Gene : Sobic.006G127500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10535//PTHR10535:SF4 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // SUBFAMILY NOT NAMED Genomic Order:  1325
Name:  ? Sobic.006G127500 Secondary Identifier:  ? PAC:37949263
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G127500 0.5kb upstream 0.5kb upstream 4691 true Chr06: 49249993-49254683 Sorghum bicolor
Sobic.006G127500 0.5kb upstream 0.5kb upstream 500 false Chr06: 49254184-49254683 Sorghum bicolor
Sobic.006G127500 0.5kb downstream 0.5kb downstream 4691 true Chr06: 49249493-49254183 Sorghum bicolor
Sobic.006G127500 0.5kb downstream 0.5kb downstream 500 false Chr06: 49249493-49249992 Sorghum bicolor
Sobic.006G127500 1.0kb upstream 1.0kb upstream 5191 true Chr06: 49249993-49255183 Sorghum bicolor
Sobic.006G127500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 49254184-49255183 Sorghum bicolor
Sobic.006G127500 1.0kb downstream 1.0kb downstream 5191 true Chr06: 49248993-49254183 Sorghum bicolor
Sobic.006G127500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 49248993-49249992 Sorghum bicolor
Sobic.006G127500 2.0kb upstream 2.0kb upstream 6191 true Chr06: 49249993-49256183 Sorghum bicolor
Sobic.006G127500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 49254184-49256183 Sorghum bicolor
Sobic.006G127500 2.0kb downstream 2.0kb downstream 6191 true Chr06: 49247993-49254183 Sorghum bicolor
Sobic.006G127500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 49247993-49249992 Sorghum bicolor
Sobic.006G127500 5.0kb upstream 5.0kb upstream 9191 true Chr06: 49249993-49259183 Sorghum bicolor
Sobic.006G127500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 49254184-49259183 Sorghum bicolor
Sobic.006G127500 5.0kb downstream 5.0kb downstream 9191 true Chr06: 49244993-49254183 Sorghum bicolor
Sobic.006G127500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 49244993-49249992 Sorghum bicolor
Sobic.006G127500 10.0kb upstream 10.0kb upstream 14191 true Chr06: 49249993-49264183 Sorghum bicolor
Sobic.006G127500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 49254184-49264183 Sorghum bicolor
Sobic.006G127500 10.0kb downstream 10.0kb downstream 14191 true Chr06: 49239993-49254183 Sorghum bicolor
Sobic.006G127500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 49239993-49249992 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185204 5267 Panicoideae View MSA
124579078 5269 Grass View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.48     High High
cufflinks 0.077       Low
cufflinks 0.341       Low
cufflinks 1.748        
cufflinks 2.421        
cufflinks 0.902        
cufflinks 1.342        
cufflinks 0.191       Low
cufflinks 2.753        
cufflinks 2.473        
cufflinks 1.624        
cufflinks 1.682        
cufflinks 0.979        
cufflinks 2.385        
cufflinks 1.282        
cufflinks 0.235       Low
cufflinks 1.518        
cufflinks 1.237        
cufflinks 0.343       Low
cufflinks 1.327        
cufflinks 5.489       High
cufflinks 2.202        
cufflinks 1.892        
cufflinks 2.393        
cufflinks 0.153       Low
cufflinks 0.042       Low
cufflinks 1.524        
cufflinks 5.206       High
cufflinks 1.386        
cufflinks 2.963        

0 Strain