Gene : Sobic.002G420800 S. bicolor v3.1.1
Defline:  (1 of 6) PF14200 - Ricin-type beta-trefoil lectin domain-like (RicinB_lectin_2) Genomic Order:  4305
Name:  ? Sobic.002G420800 Secondary Identifier:  ? PAC:37950399
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G420800 0.5kb upstream 0.5kb upstream 3605 true Chr02: 76831553-76835157 Sorghum bicolor
Sobic.002G420800 0.5kb upstream 0.5kb upstream 500 false Chr02: 76831553-76832052 Sorghum bicolor
Sobic.002G420800 0.5kb downstream 0.5kb downstream 3605 true Chr02: 76832053-76835657 Sorghum bicolor
Sobic.002G420800 0.5kb downstream 0.5kb downstream 500 false Chr02: 76835158-76835657 Sorghum bicolor
Sobic.002G420800 1.0kb upstream 1.0kb upstream 4105 true Chr02: 76831053-76835157 Sorghum bicolor
Sobic.002G420800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 76831053-76832052 Sorghum bicolor
Sobic.002G420800 1.0kb downstream 1.0kb downstream 4105 true Chr02: 76832053-76836157 Sorghum bicolor
Sobic.002G420800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 76835158-76836157 Sorghum bicolor
Sobic.002G420800 2.0kb upstream 2.0kb upstream 5105 true Chr02: 76830053-76835157 Sorghum bicolor
Sobic.002G420800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 76830053-76832052 Sorghum bicolor
Sobic.002G420800 2.0kb downstream 2.0kb downstream 5105 true Chr02: 76832053-76837157 Sorghum bicolor
Sobic.002G420800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 76835158-76837157 Sorghum bicolor
Sobic.002G420800 5.0kb upstream 5.0kb upstream 8105 true Chr02: 76827053-76835157 Sorghum bicolor
Sobic.002G420800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 76827053-76832052 Sorghum bicolor
Sobic.002G420800 5.0kb downstream 5.0kb downstream 8105 true Chr02: 76832053-76840157 Sorghum bicolor
Sobic.002G420800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 76835158-76840157 Sorghum bicolor
Sobic.002G420800 10.0kb upstream 10.0kb upstream 13105 true Chr02: 76822053-76835157 Sorghum bicolor
Sobic.002G420800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 76822053-76832052 Sorghum bicolor
Sobic.002G420800 10.0kb downstream 10.0kb downstream 13105 true Chr02: 76832053-76845157 Sorghum bicolor
Sobic.002G420800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 76835158-76845157 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184933 5267 Panicoideae View MSA
124573741 5269 Grass View MSA
122049376 5273 Angiosperm View MSA
121349071 5274 Embryophyte View MSA
123381151 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.164       Low
cufflinks 0.551        
cufflinks 0.996        
cufflinks 1.323        
cufflinks 0.716        
cufflinks 0.698        
cufflinks 6.101        
cufflinks 1.453        
cufflinks 5.427        
cufflinks 4.53        
cufflinks 1.392        
cufflinks 3.391        
cufflinks 8.116        
cufflinks 2.115        
cufflinks 9.343       High
cufflinks 1.443        
cufflinks 6.251        
cufflinks 3.699        
cufflinks 1.459        
cufflinks 8.161        
cufflinks 0.083     Low Low
cufflinks 6.98        
cufflinks 3.657        
cufflinks 2.27        
cufflinks 0.197       Low
cufflinks 0.252       Low
cufflinks 17.079     High High
cufflinks 0.092       Low
cufflinks 1.983        
cufflinks 37.854     High High

0 Strain