Gene : Sobic.002G414800 S. bicolor v3.1.1
Defline:  (1 of 59) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  4244
Name:  ? Sobic.002G414800 Secondary Identifier:  ? PAC:37952813
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G414800 0.5kb upstream 0.5kb upstream 4137 true Chr02: 76194683-76198819 Sorghum bicolor
Sobic.002G414800 0.5kb upstream 0.5kb upstream 500 false Chr02: 76198320-76198819 Sorghum bicolor
Sobic.002G414800 0.5kb downstream 0.5kb downstream 4137 true Chr02: 76194183-76198319 Sorghum bicolor
Sobic.002G414800 0.5kb downstream 0.5kb downstream 500 false Chr02: 76194183-76194682 Sorghum bicolor
Sobic.002G414800 1.0kb upstream 1.0kb upstream 4637 true Chr02: 76194683-76199319 Sorghum bicolor
Sobic.002G414800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 76198320-76199319 Sorghum bicolor
Sobic.002G414800 1.0kb downstream 1.0kb downstream 4637 true Chr02: 76193683-76198319 Sorghum bicolor
Sobic.002G414800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 76193683-76194682 Sorghum bicolor
Sobic.002G414800 2.0kb upstream 2.0kb upstream 5637 true Chr02: 76194683-76200319 Sorghum bicolor
Sobic.002G414800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 76198320-76200319 Sorghum bicolor
Sobic.002G414800 2.0kb downstream 2.0kb downstream 5637 true Chr02: 76192683-76198319 Sorghum bicolor
Sobic.002G414800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 76192683-76194682 Sorghum bicolor
Sobic.002G414800 5.0kb upstream 5.0kb upstream 8637 true Chr02: 76194683-76203319 Sorghum bicolor
Sobic.002G414800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 76198320-76203319 Sorghum bicolor
Sobic.002G414800 5.0kb downstream 5.0kb downstream 8637 true Chr02: 76189683-76198319 Sorghum bicolor
Sobic.002G414800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 76189683-76194682 Sorghum bicolor
Sobic.002G414800 10.0kb upstream 10.0kb upstream 13637 true Chr02: 76194683-76208319 Sorghum bicolor
Sobic.002G414800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 76198320-76208319 Sorghum bicolor
Sobic.002G414800 10.0kb downstream 10.0kb downstream 13637 true Chr02: 76184683-76198319 Sorghum bicolor
Sobic.002G414800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 76184683-76194682 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197140 5267 Panicoideae View MSA
124574738 5269 Grass View MSA
122041778 5273 Angiosperm View MSA
121309888 5274 Embryophyte View MSA
123347524 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.054       High
cufflinks 0.095       Low
cufflinks 0.181       Low
cufflinks 0.411        
cufflinks 0.758        
cufflinks 0.937        
cufflinks 0.728        
cufflinks 0.394        
cufflinks 1.082        
cufflinks 1.013        
cufflinks 0.98        
cufflinks 1.45        
cufflinks 1.494        
cufflinks 1.421        
cufflinks 1.343        
cufflinks 0.175       Low
cufflinks 0.804        
cufflinks 0.803        
cufflinks 0.378        
cufflinks 0.615        
cufflinks 2.291       High
cufflinks 0.844        
cufflinks 1.267        
cufflinks 1.179        
cufflinks 0.144       Low
cufflinks 0.149       Low
cufflinks 0.887        
cufflinks 0.917        
cufflinks 0.913        
cufflinks 1.554       High

0 Strain