Gene : Sobic.002G418200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23336//PTHR23336:SF10 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. // B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Genomic Order:  4279
Name:  ? Sobic.002G418200 Secondary Identifier:  ? PAC:37952989
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G418200 0.5kb upstream 0.5kb upstream 7639 true Chr02: 76599479-76607117 Sorghum bicolor
Sobic.002G418200 0.5kb upstream 0.5kb upstream 500 false Chr02: 76606618-76607117 Sorghum bicolor
Sobic.002G418200 0.5kb downstream 0.5kb downstream 7639 true Chr02: 76598979-76606617 Sorghum bicolor
Sobic.002G418200 0.5kb downstream 0.5kb downstream 500 false Chr02: 76598979-76599478 Sorghum bicolor
Sobic.002G418200 1.0kb upstream 1.0kb upstream 8139 true Chr02: 76599479-76607617 Sorghum bicolor
Sobic.002G418200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 76606618-76607617 Sorghum bicolor
Sobic.002G418200 1.0kb downstream 1.0kb downstream 8139 true Chr02: 76598479-76606617 Sorghum bicolor
Sobic.002G418200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 76598479-76599478 Sorghum bicolor
Sobic.002G418200 2.0kb upstream 2.0kb upstream 9139 true Chr02: 76599479-76608617 Sorghum bicolor
Sobic.002G418200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 76606618-76608617 Sorghum bicolor
Sobic.002G418200 2.0kb downstream 2.0kb downstream 9139 true Chr02: 76597479-76606617 Sorghum bicolor
Sobic.002G418200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 76597479-76599478 Sorghum bicolor
Sobic.002G418200 5.0kb upstream 5.0kb upstream 12139 true Chr02: 76599479-76611617 Sorghum bicolor
Sobic.002G418200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 76606618-76611617 Sorghum bicolor
Sobic.002G418200 5.0kb downstream 5.0kb downstream 12139 true Chr02: 76594479-76606617 Sorghum bicolor
Sobic.002G418200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 76594479-76599478 Sorghum bicolor
Sobic.002G418200 10.0kb upstream 10.0kb upstream 17139 true Chr02: 76599479-76616617 Sorghum bicolor
Sobic.002G418200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 76606618-76616617 Sorghum bicolor
Sobic.002G418200 10.0kb downstream 10.0kb downstream 17139 true Chr02: 76589479-76606617 Sorghum bicolor
Sobic.002G418200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 76589479-76599478 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178827 5267 Panicoideae View MSA
124580725 5269 Grass View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.292       Low
cufflinks 13.885     High  
cufflinks 9.79     High  
cufflinks 5.424       Low
cufflinks 5.606       Low
cufflinks 17.876     High  
cufflinks 19.878     High  
cufflinks 31.953     High High
cufflinks 16.983     High  
cufflinks 10.591        
cufflinks 17.547     High  
cufflinks 20.906     High  
cufflinks 32.042     High High
cufflinks 16.014     High  
cufflinks 11.688        
cufflinks 13.42     High  
cufflinks 19.978     High  
cufflinks 18.447     High  
cufflinks 25.302     High  
cufflinks 18.954     High  
cufflinks 7.572        
cufflinks 13.185     High  
cufflinks 17.222     High  
cufflinks 16.233     High  
cufflinks 13.41     High  
cufflinks 14.421     High  
cufflinks 17.392     High  
cufflinks 1.339       Low
cufflinks 25.521     High  
cufflinks 9.671        

0 Strain