Gene : Sobic.002G407000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR32518:SF3 - 4-ALPHA-GLUCANOTRANSFERASE DPE2 Genomic Order:  4172
Name:  ? Sobic.002G407000 Secondary Identifier:  ? PAC:37951314
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6724 Sorghum bicolor pathologic  
Sbicolor PWY-7238 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G407000 0.5kb upstream 0.5kb upstream 8636 true Chr02: 75631706-75640341 Sorghum bicolor
Sobic.002G407000 0.5kb upstream 0.5kb upstream 500 false Chr02: 75631706-75632205 Sorghum bicolor
Sobic.002G407000 0.5kb downstream 0.5kb downstream 8636 true Chr02: 75632206-75640841 Sorghum bicolor
Sobic.002G407000 0.5kb downstream 0.5kb downstream 500 false Chr02: 75640342-75640841 Sorghum bicolor
Sobic.002G407000 1.0kb upstream 1.0kb upstream 9136 true Chr02: 75631206-75640341 Sorghum bicolor
Sobic.002G407000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 75631206-75632205 Sorghum bicolor
Sobic.002G407000 1.0kb downstream 1.0kb downstream 9136 true Chr02: 75632206-75641341 Sorghum bicolor
Sobic.002G407000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 75640342-75641341 Sorghum bicolor
Sobic.002G407000 2.0kb upstream 2.0kb upstream 10136 true Chr02: 75630206-75640341 Sorghum bicolor
Sobic.002G407000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 75630206-75632205 Sorghum bicolor
Sobic.002G407000 2.0kb downstream 2.0kb downstream 10136 true Chr02: 75632206-75642341 Sorghum bicolor
Sobic.002G407000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 75640342-75642341 Sorghum bicolor
Sobic.002G407000 5.0kb upstream 5.0kb upstream 13136 true Chr02: 75627206-75640341 Sorghum bicolor
Sobic.002G407000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 75627206-75632205 Sorghum bicolor
Sobic.002G407000 5.0kb downstream 5.0kb downstream 13136 true Chr02: 75632206-75645341 Sorghum bicolor
Sobic.002G407000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 75640342-75645341 Sorghum bicolor
Sobic.002G407000 10.0kb upstream 10.0kb upstream 18136 true Chr02: 75622206-75640341 Sorghum bicolor
Sobic.002G407000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 75622206-75632205 Sorghum bicolor
Sobic.002G407000 10.0kb downstream 10.0kb downstream 18136 true Chr02: 75632206-75650341 Sorghum bicolor
Sobic.002G407000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 75640342-75650341 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192218 5267 Panicoideae View MSA
124569180 5269 Grass View MSA
122045486 5273 Angiosperm View MSA
121345018 5274 Embryophyte View MSA
123425111 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.604        
cufflinks 20.448     High  
cufflinks 13.88     High  
cufflinks 14.672     High  
cufflinks 23.07     High  
cufflinks 12.245        
cufflinks 32.194     High High
cufflinks 29.102     High  
cufflinks 44.096     High High
cufflinks 36.768     High High
cufflinks 11.446        
cufflinks 10.117        
cufflinks 14.723     High  
cufflinks 6.69       Low
cufflinks 35.359     High High
cufflinks 17.308     High  
cufflinks 31.353     High High
cufflinks 35.232     High High
cufflinks 16.738     High  
cufflinks 32.799     High High
cufflinks 16.7     High  
cufflinks 15.18     High  
cufflinks 12.918     High  
cufflinks 13.547     High  
cufflinks 30.376     High  
cufflinks 40.461     High High
cufflinks 3.28       Low
cufflinks 4.85       Low
cufflinks 31.938     High High
cufflinks 23.547     High  

0 Strain