Gene : Sobic.006G198400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR30031//PTHR30031:SF2 - PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP // SUBFAMILY NOT NAMED Genomic Order:  2066
Name:  ? Sobic.006G198400 Secondary Identifier:  ? PAC:37949035
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLUCONEO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-561 Sorghum bicolor pathologic  
Sbicolor PWY-7117 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G198400 0.5kb upstream 0.5kb upstream 4433 true Chr06: 55078094-55082526 Sorghum bicolor
Sobic.006G198400 0.5kb upstream 0.5kb upstream 500 false Chr06: 55082027-55082526 Sorghum bicolor
Sobic.006G198400 0.5kb downstream 0.5kb downstream 4433 true Chr06: 55077594-55082026 Sorghum bicolor
Sobic.006G198400 0.5kb downstream 0.5kb downstream 500 false Chr06: 55077594-55078093 Sorghum bicolor
Sobic.006G198400 1.0kb upstream 1.0kb upstream 4933 true Chr06: 55078094-55083026 Sorghum bicolor
Sobic.006G198400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 55082027-55083026 Sorghum bicolor
Sobic.006G198400 1.0kb downstream 1.0kb downstream 4933 true Chr06: 55077094-55082026 Sorghum bicolor
Sobic.006G198400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 55077094-55078093 Sorghum bicolor
Sobic.006G198400 2.0kb upstream 2.0kb upstream 5933 true Chr06: 55078094-55084026 Sorghum bicolor
Sobic.006G198400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 55082027-55084026 Sorghum bicolor
Sobic.006G198400 2.0kb downstream 2.0kb downstream 5933 true Chr06: 55076094-55082026 Sorghum bicolor
Sobic.006G198400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 55076094-55078093 Sorghum bicolor
Sobic.006G198400 5.0kb upstream 5.0kb upstream 8933 true Chr06: 55078094-55087026 Sorghum bicolor
Sobic.006G198400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 55082027-55087026 Sorghum bicolor
Sobic.006G198400 5.0kb downstream 5.0kb downstream 8933 true Chr06: 55073094-55082026 Sorghum bicolor
Sobic.006G198400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 55073094-55078093 Sorghum bicolor
Sobic.006G198400 10.0kb upstream 10.0kb upstream 13933 true Chr06: 55078094-55092026 Sorghum bicolor
Sobic.006G198400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 55082027-55092026 Sorghum bicolor
Sobic.006G198400 10.0kb downstream 10.0kb downstream 13933 true Chr06: 55068094-55082026 Sorghum bicolor
Sobic.006G198400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 55068094-55078093 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185578 5267 Panicoideae View MSA
124569372 5269 Grass View MSA
122049191 5273 Angiosperm View MSA
121348901 5274 Embryophyte View MSA
123381068 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.443        
cufflinks 1.675        
cufflinks 1.641        
cufflinks 1.676        
cufflinks 2.846       High
cufflinks 2.757       High
cufflinks 1.937        
cufflinks 1.049       Low
cufflinks 2.193        
cufflinks 2.088        
cufflinks 1.555        
cufflinks 1.476        
cufflinks 2.466       High
cufflinks 1.372        
cufflinks 1.905        
cufflinks 0.703       Low
cufflinks 1.677        
cufflinks 1.699        
cufflinks 1.233       Low
cufflinks 1.16       Low
cufflinks 3.703       High
cufflinks 1.853        
cufflinks 1.604        
cufflinks 1.799        
cufflinks 0.769       Low
cufflinks 1.08       Low
cufflinks 1.931        
cufflinks 1.484        
cufflinks 1.835        
cufflinks 2.24        

0 Strain