Gene : Sobic.002G404700 S. bicolor v3.1.1
Defline:  (1 of 1) K11367 - chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12] (CHD1) Genomic Order:  4149
Name:  ? Sobic.002G404700 Secondary Identifier:  ? PAC:37954836
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G404700 0.5kb upstream 0.5kb upstream 16255 true Chr02: 75441736-75457990 Sorghum bicolor
Sobic.002G404700 0.5kb upstream 0.5kb upstream 500 false Chr02: 75457491-75457990 Sorghum bicolor
Sobic.002G404700 0.5kb downstream 0.5kb downstream 16255 true Chr02: 75441236-75457490 Sorghum bicolor
Sobic.002G404700 0.5kb downstream 0.5kb downstream 500 false Chr02: 75441236-75441735 Sorghum bicolor
Sobic.002G404700 1.0kb upstream 1.0kb upstream 16755 true Chr02: 75441736-75458490 Sorghum bicolor
Sobic.002G404700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 75457491-75458490 Sorghum bicolor
Sobic.002G404700 1.0kb downstream 1.0kb downstream 16755 true Chr02: 75440736-75457490 Sorghum bicolor
Sobic.002G404700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 75440736-75441735 Sorghum bicolor
Sobic.002G404700 2.0kb upstream 2.0kb upstream 17755 true Chr02: 75441736-75459490 Sorghum bicolor
Sobic.002G404700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 75457491-75459490 Sorghum bicolor
Sobic.002G404700 2.0kb downstream 2.0kb downstream 17755 true Chr02: 75439736-75457490 Sorghum bicolor
Sobic.002G404700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 75439736-75441735 Sorghum bicolor
Sobic.002G404700 5.0kb upstream 5.0kb upstream 20755 true Chr02: 75441736-75462490 Sorghum bicolor
Sobic.002G404700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 75457491-75462490 Sorghum bicolor
Sobic.002G404700 5.0kb downstream 5.0kb downstream 20755 true Chr02: 75436736-75457490 Sorghum bicolor
Sobic.002G404700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 75436736-75441735 Sorghum bicolor
Sobic.002G404700 10.0kb upstream 10.0kb upstream 25755 true Chr02: 75441736-75467490 Sorghum bicolor
Sobic.002G404700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 75457491-75467490 Sorghum bicolor
Sobic.002G404700 10.0kb downstream 10.0kb downstream 25755 true Chr02: 75431736-75457490 Sorghum bicolor
Sobic.002G404700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 75431736-75441735 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196381 5267 Panicoideae View MSA
124582069 5269 Grass View MSA
122051163 5273 Angiosperm View MSA
121347605 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.401       Low
cufflinks 16.59     High  
cufflinks 18.707     High  
cufflinks 10.645       Low
cufflinks 25.01     High High
cufflinks 15.179     High  
cufflinks 13.945     High  
cufflinks 11.488     High  
cufflinks 19.049     High  
cufflinks 15.97     High  
cufflinks 17.672     High  
cufflinks 19.419     High  
cufflinks 16.077     High  
cufflinks 15.386     High  
cufflinks 21.547     High High
cufflinks 16.847     High  
cufflinks 11.846     High  
cufflinks 13.067     High  
cufflinks 24.199     High High
cufflinks 11.789        
cufflinks 23.703     High High
cufflinks 14.885     High  
cufflinks 14.646     High  
cufflinks 14.003     High  
cufflinks 21.964     High High
cufflinks 17.304     High  
cufflinks 18.993     High  
cufflinks 12.252     High  
cufflinks 12.043     High  
cufflinks 22.807     High High

0 Strain