Gene : Sobic.006G210800 S. bicolor v3.1.1
Defline:  (1 of 2) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  2195
Name:  ? Sobic.006G210800 Secondary Identifier:  ? PAC:37948436
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CHLOROPHYLL-SYN Sorghum bicolor pathologic  
Sbicolor HEME-BIOSYNTHESIS-II Sorghum bicolor pathologic  
Sbicolor PWY-5918 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G210800 0.5kb upstream 0.5kb upstream 4434 true Chr06: 56031916-56036349 Sorghum bicolor
Sobic.006G210800 0.5kb upstream 0.5kb upstream 500 false Chr06: 56031916-56032415 Sorghum bicolor
Sobic.006G210800 0.5kb downstream 0.5kb downstream 4434 true Chr06: 56032416-56036849 Sorghum bicolor
Sobic.006G210800 0.5kb downstream 0.5kb downstream 500 false Chr06: 56036350-56036849 Sorghum bicolor
Sobic.006G210800 1.0kb upstream 1.0kb upstream 4934 true Chr06: 56031416-56036349 Sorghum bicolor
Sobic.006G210800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 56031416-56032415 Sorghum bicolor
Sobic.006G210800 1.0kb downstream 1.0kb downstream 4934 true Chr06: 56032416-56037349 Sorghum bicolor
Sobic.006G210800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 56036350-56037349 Sorghum bicolor
Sobic.006G210800 2.0kb upstream 2.0kb upstream 5934 true Chr06: 56030416-56036349 Sorghum bicolor
Sobic.006G210800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 56030416-56032415 Sorghum bicolor
Sobic.006G210800 2.0kb downstream 2.0kb downstream 5934 true Chr06: 56032416-56038349 Sorghum bicolor
Sobic.006G210800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 56036350-56038349 Sorghum bicolor
Sobic.006G210800 5.0kb upstream 5.0kb upstream 8934 true Chr06: 56027416-56036349 Sorghum bicolor
Sobic.006G210800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 56027416-56032415 Sorghum bicolor
Sobic.006G210800 5.0kb downstream 5.0kb downstream 8934 true Chr06: 56032416-56041349 Sorghum bicolor
Sobic.006G210800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 56036350-56041349 Sorghum bicolor
Sobic.006G210800 10.0kb upstream 10.0kb upstream 13934 true Chr06: 56022416-56036349 Sorghum bicolor
Sobic.006G210800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 56022416-56032415 Sorghum bicolor
Sobic.006G210800 10.0kb downstream 10.0kb downstream 13934 true Chr06: 56032416-56046349 Sorghum bicolor
Sobic.006G210800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 56036350-56046349 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183301 5267 Panicoideae View MSA
124572100 5269 Grass View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.139     High High
cufflinks 14.005     High  
cufflinks 13.225     High  
cufflinks 10.559        
cufflinks 7.474        
cufflinks 10.637        
cufflinks 22.947     High  
cufflinks 74.079     High High
cufflinks 4.129        
cufflinks 3.574       Low
cufflinks 4.799        
cufflinks 3.002       Low
cufflinks 3.404       Low
cufflinks 6.263        
cufflinks 7.598        
cufflinks 13.505     High  
cufflinks 27.641     High High
cufflinks 29.16     High High
cufflinks 14.375     High  
cufflinks 15.37     High  
cufflinks 9.351        
cufflinks 5.331        
cufflinks 4.346        
cufflinks 4.071        
cufflinks 7.826        
cufflinks 18.836     High  
cufflinks 4.77        
cufflinks 11.334     High  
cufflinks 81.583     High High
cufflinks 8.678        

0 Strain