Gene : Sobic.002G382600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR21297//PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II // DNA-DIRECTED RNA POLYMERASE II PROTEIN Genomic Order:  3918
Name:  ? Sobic.002G382600 Secondary Identifier:  ? PAC:37955070
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G382600 0.5kb upstream 0.5kb upstream 4759 true Chr02: 73849197-73853955 Sorghum bicolor
Sobic.002G382600 0.5kb upstream 0.5kb upstream 500 false Chr02: 73849197-73849696 Sorghum bicolor
Sobic.002G382600 0.5kb downstream 0.5kb downstream 4759 true Chr02: 73849697-73854455 Sorghum bicolor
Sobic.002G382600 0.5kb downstream 0.5kb downstream 500 false Chr02: 73853956-73854455 Sorghum bicolor
Sobic.002G382600 1.0kb upstream 1.0kb upstream 5259 true Chr02: 73848697-73853955 Sorghum bicolor
Sobic.002G382600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 73848697-73849696 Sorghum bicolor
Sobic.002G382600 1.0kb downstream 1.0kb downstream 5259 true Chr02: 73849697-73854955 Sorghum bicolor
Sobic.002G382600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 73853956-73854955 Sorghum bicolor
Sobic.002G382600 2.0kb upstream 2.0kb upstream 6259 true Chr02: 73847697-73853955 Sorghum bicolor
Sobic.002G382600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 73847697-73849696 Sorghum bicolor
Sobic.002G382600 2.0kb downstream 2.0kb downstream 6259 true Chr02: 73849697-73855955 Sorghum bicolor
Sobic.002G382600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 73853956-73855955 Sorghum bicolor
Sobic.002G382600 5.0kb upstream 5.0kb upstream 9259 true Chr02: 73844697-73853955 Sorghum bicolor
Sobic.002G382600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 73844697-73849696 Sorghum bicolor
Sobic.002G382600 5.0kb downstream 5.0kb downstream 9259 true Chr02: 73849697-73858955 Sorghum bicolor
Sobic.002G382600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 73853956-73858955 Sorghum bicolor
Sobic.002G382600 10.0kb upstream 10.0kb upstream 14259 true Chr02: 73839697-73853955 Sorghum bicolor
Sobic.002G382600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 73839697-73849696 Sorghum bicolor
Sobic.002G382600 10.0kb downstream 10.0kb downstream 14259 true Chr02: 73849697-73863955 Sorghum bicolor
Sobic.002G382600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 73853956-73863955 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041351 5273 Angiosperm View MSA
122199190 5267 Panicoideae View MSA
124568746 5269 Grass View MSA
121346749 5274 Embryophyte View MSA
123424526 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.026       Low
cufflinks 3.707       Low
cufflinks 6.666        
cufflinks 10.54       High
cufflinks 3.961       Low
cufflinks 7.471        
cufflinks 6.248        
cufflinks 5.018        
cufflinks 13.219     High High
cufflinks 12.684     High High
cufflinks 6.703        
cufflinks 11.759     High High
cufflinks 9.423       High
cufflinks 7.836        
cufflinks 6.31        
cufflinks 7.448        
cufflinks 6.997        
cufflinks 6.499        
cufflinks 6.359        
cufflinks 11.578       High
cufflinks 6.488        
cufflinks 6.012        
cufflinks 8.653        
cufflinks 7.312        
cufflinks 6.805        
cufflinks 3.714       Low
cufflinks 8.207        
cufflinks 5.98        
cufflinks 4.67        
cufflinks 6.391        

0 Strain