Gene : Sobic.002G378700 S. bicolor v3.1.1
Defline:  (1 of 164) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3874
Name:  ? Sobic.002G378700 Secondary Identifier:  ? PAC:37949991
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G378700 0.5kb upstream 0.5kb upstream 2288 true Chr02: 73494622-73496909 Sorghum bicolor
Sobic.002G378700 0.5kb upstream 0.5kb upstream 500 false Chr02: 73494622-73495121 Sorghum bicolor
Sobic.002G378700 0.5kb downstream 0.5kb downstream 2288 true Chr02: 73495122-73497409 Sorghum bicolor
Sobic.002G378700 0.5kb downstream 0.5kb downstream 500 false Chr02: 73496910-73497409 Sorghum bicolor
Sobic.002G378700 1.0kb upstream 1.0kb upstream 2788 true Chr02: 73494122-73496909 Sorghum bicolor
Sobic.002G378700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 73494122-73495121 Sorghum bicolor
Sobic.002G378700 1.0kb downstream 1.0kb downstream 2788 true Chr02: 73495122-73497909 Sorghum bicolor
Sobic.002G378700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 73496910-73497909 Sorghum bicolor
Sobic.002G378700 2.0kb upstream 2.0kb upstream 3788 true Chr02: 73493122-73496909 Sorghum bicolor
Sobic.002G378700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 73493122-73495121 Sorghum bicolor
Sobic.002G378700 2.0kb downstream 2.0kb downstream 3788 true Chr02: 73495122-73498909 Sorghum bicolor
Sobic.002G378700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 73496910-73498909 Sorghum bicolor
Sobic.002G378700 5.0kb upstream 5.0kb upstream 6788 true Chr02: 73490122-73496909 Sorghum bicolor
Sobic.002G378700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 73490122-73495121 Sorghum bicolor
Sobic.002G378700 5.0kb downstream 5.0kb downstream 6788 true Chr02: 73495122-73501909 Sorghum bicolor
Sobic.002G378700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 73496910-73501909 Sorghum bicolor
Sobic.002G378700 10.0kb upstream 10.0kb upstream 11788 true Chr02: 73485122-73496909 Sorghum bicolor
Sobic.002G378700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 73485122-73495121 Sorghum bicolor
Sobic.002G378700 10.0kb downstream 10.0kb downstream 11788 true Chr02: 73495122-73506909 Sorghum bicolor
Sobic.002G378700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 73496910-73506909 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192543 5267 Panicoideae View MSA
124572061 5269 Grass View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.628        
cufflinks 1.0       Low
cufflinks 2.277        
cufflinks 2.603        
cufflinks 2.973       High
cufflinks 0.876       Low
cufflinks 1.805        
cufflinks 1.744        
cufflinks 2.2        
cufflinks 1.959        
cufflinks 1.16        
cufflinks 2.177        
cufflinks 1.872        
cufflinks 1.364        
cufflinks 2.264        
cufflinks 1.229        
cufflinks 2.267        
cufflinks 2.005        
cufflinks 2.964       High
cufflinks 2.172        
cufflinks 4.275       High
cufflinks 1.307        
cufflinks 1.697        
cufflinks 1.656        
cufflinks 1.672        
cufflinks 1.596        
cufflinks 1.678        
cufflinks 3.203       High
cufflinks 1.566        
cufflinks 2.702        

0 Strain