Gene : Sobic.002G371500 S. bicolor v3.1.1
Defline:  (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  3800
Name:  ? Sobic.002G371500 Secondary Identifier:  ? PAC:37952325
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G371500 0.5kb upstream 0.5kb upstream 5145 true Chr02: 73007693-73012837 Sorghum bicolor
Sobic.002G371500 0.5kb upstream 0.5kb upstream 500 false Chr02: 73007693-73008192 Sorghum bicolor
Sobic.002G371500 0.5kb downstream 0.5kb downstream 5145 true Chr02: 73008193-73013337 Sorghum bicolor
Sobic.002G371500 0.5kb downstream 0.5kb downstream 500 false Chr02: 73012838-73013337 Sorghum bicolor
Sobic.002G371500 1.0kb upstream 1.0kb upstream 5645 true Chr02: 73007193-73012837 Sorghum bicolor
Sobic.002G371500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 73007193-73008192 Sorghum bicolor
Sobic.002G371500 1.0kb downstream 1.0kb downstream 5645 true Chr02: 73008193-73013837 Sorghum bicolor
Sobic.002G371500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 73012838-73013837 Sorghum bicolor
Sobic.002G371500 2.0kb upstream 2.0kb upstream 6645 true Chr02: 73006193-73012837 Sorghum bicolor
Sobic.002G371500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 73006193-73008192 Sorghum bicolor
Sobic.002G371500 2.0kb downstream 2.0kb downstream 6645 true Chr02: 73008193-73014837 Sorghum bicolor
Sobic.002G371500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 73012838-73014837 Sorghum bicolor
Sobic.002G371500 5.0kb upstream 5.0kb upstream 9645 true Chr02: 73003193-73012837 Sorghum bicolor
Sobic.002G371500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 73003193-73008192 Sorghum bicolor
Sobic.002G371500 5.0kb downstream 5.0kb downstream 9645 true Chr02: 73008193-73017837 Sorghum bicolor
Sobic.002G371500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 73012838-73017837 Sorghum bicolor
Sobic.002G371500 10.0kb upstream 10.0kb upstream 14645 true Chr02: 72998193-73012837 Sorghum bicolor
Sobic.002G371500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 72998193-73008192 Sorghum bicolor
Sobic.002G371500 10.0kb downstream 10.0kb downstream 14645 true Chr02: 73008193-73022837 Sorghum bicolor
Sobic.002G371500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 73012838-73022837 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193534 5267 Panicoideae View MSA
124572333 5269 Grass View MSA
122044868 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.492       High
cufflinks 2.025        
cufflinks 1.986        
cufflinks 2.314        
cufflinks 1.892        
cufflinks 5.239       High
cufflinks 1.846        
cufflinks 1.969        
cufflinks 2.316        
cufflinks 2.69        
cufflinks 1.166       Low
cufflinks 1.066       Low
cufflinks 1.88        
cufflinks 1.012       Low
cufflinks 1.814        
cufflinks 2.201        
cufflinks 1.659        
cufflinks 2.062        
cufflinks 1.797        
cufflinks 1.421        
cufflinks 3.25       High
cufflinks 1.534        
cufflinks 1.169       Low
cufflinks 1.083       Low
cufflinks 2.21        
cufflinks 1.888        
cufflinks 1.448        
cufflinks 2.203        
cufflinks 2.726        
cufflinks 1.72        

0 Strain