Gene : Sobic.002G362200 S. bicolor v3.1.1
Defline:  (1 of 1) K08735 - DNA mismatch repair protein MSH2 (MSH2) Genomic Order:  3706
Name:  ? Sobic.002G362200 Secondary Identifier:  ? PAC:37953992
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G362200 0.5kb upstream 0.5kb upstream 10390 true Chr02: 72341324-72351713 Sorghum bicolor
Sobic.002G362200 0.5kb upstream 0.5kb upstream 500 false Chr02: 72351214-72351713 Sorghum bicolor
Sobic.002G362200 0.5kb downstream 0.5kb downstream 10390 true Chr02: 72340824-72351213 Sorghum bicolor
Sobic.002G362200 0.5kb downstream 0.5kb downstream 500 false Chr02: 72340824-72341323 Sorghum bicolor
Sobic.002G362200 1.0kb upstream 1.0kb upstream 10890 true Chr02: 72341324-72352213 Sorghum bicolor
Sobic.002G362200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 72351214-72352213 Sorghum bicolor
Sobic.002G362200 1.0kb downstream 1.0kb downstream 10890 true Chr02: 72340324-72351213 Sorghum bicolor
Sobic.002G362200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 72340324-72341323 Sorghum bicolor
Sobic.002G362200 2.0kb upstream 2.0kb upstream 11890 true Chr02: 72341324-72353213 Sorghum bicolor
Sobic.002G362200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 72351214-72353213 Sorghum bicolor
Sobic.002G362200 2.0kb downstream 2.0kb downstream 11890 true Chr02: 72339324-72351213 Sorghum bicolor
Sobic.002G362200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 72339324-72341323 Sorghum bicolor
Sobic.002G362200 5.0kb upstream 5.0kb upstream 14890 true Chr02: 72341324-72356213 Sorghum bicolor
Sobic.002G362200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 72351214-72356213 Sorghum bicolor
Sobic.002G362200 5.0kb downstream 5.0kb downstream 14890 true Chr02: 72336324-72351213 Sorghum bicolor
Sobic.002G362200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 72336324-72341323 Sorghum bicolor
Sobic.002G362200 10.0kb upstream 10.0kb upstream 19890 true Chr02: 72341324-72361213 Sorghum bicolor
Sobic.002G362200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 72351214-72361213 Sorghum bicolor
Sobic.002G362200 10.0kb downstream 10.0kb downstream 19890 true Chr02: 72331324-72351213 Sorghum bicolor
Sobic.002G362200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 72331324-72341323 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176905 5267 Panicoideae View MSA
124580269 5269 Grass View MSA
122042672 5273 Angiosperm View MSA
121343804 5274 Embryophyte View MSA
123423885 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.717       High
cufflinks 0.07       Low
cufflinks 0.279       Low
cufflinks 0.53        
cufflinks 3.505        
cufflinks 0.739        
cufflinks 1.939        
cufflinks 0.292       Low
cufflinks 2.617        
cufflinks 2.761        
cufflinks 2.164        
cufflinks 1.974        
cufflinks 1.653        
cufflinks 1.927        
cufflinks 1.635        
cufflinks 0.204       Low
cufflinks 1.916        
cufflinks 2.183        
cufflinks 0.276       Low
cufflinks 1.375        
cufflinks 12.002       High
cufflinks 2.097        
cufflinks 2.417        
cufflinks 2.549        
cufflinks 0.123       Low
cufflinks 0.049       Low
cufflinks 1.669        
cufflinks 2.048        
cufflinks 0.836        
cufflinks 2.497        

0 Strain