Gene : Sobic.006G217000 S. bicolor v3.1.1
Defline:  (1 of 1) 4.2.1.19 - Imidazoleglycerol-phosphate dehydratase Genomic Order:  2264
Name:  ? Sobic.006G217000 Secondary Identifier:  ? PAC:37945348
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor HISTSYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G217000 0.5kb upstream 0.5kb upstream 4298 true Chr06: 56482220-56486517 Sorghum bicolor
Sobic.006G217000 0.5kb upstream 0.5kb upstream 500 false Chr06: 56482220-56482719 Sorghum bicolor
Sobic.006G217000 0.5kb downstream 0.5kb downstream 4298 true Chr06: 56482720-56487017 Sorghum bicolor
Sobic.006G217000 0.5kb downstream 0.5kb downstream 500 false Chr06: 56486518-56487017 Sorghum bicolor
Sobic.006G217000 1.0kb upstream 1.0kb upstream 4798 true Chr06: 56481720-56486517 Sorghum bicolor
Sobic.006G217000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 56481720-56482719 Sorghum bicolor
Sobic.006G217000 1.0kb downstream 1.0kb downstream 4798 true Chr06: 56482720-56487517 Sorghum bicolor
Sobic.006G217000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 56486518-56487517 Sorghum bicolor
Sobic.006G217000 2.0kb upstream 2.0kb upstream 5798 true Chr06: 56480720-56486517 Sorghum bicolor
Sobic.006G217000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 56480720-56482719 Sorghum bicolor
Sobic.006G217000 2.0kb downstream 2.0kb downstream 5798 true Chr06: 56482720-56488517 Sorghum bicolor
Sobic.006G217000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 56486518-56488517 Sorghum bicolor
Sobic.006G217000 5.0kb upstream 5.0kb upstream 8798 true Chr06: 56477720-56486517 Sorghum bicolor
Sobic.006G217000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 56477720-56482719 Sorghum bicolor
Sobic.006G217000 5.0kb downstream 5.0kb downstream 8798 true Chr06: 56482720-56491517 Sorghum bicolor
Sobic.006G217000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 56486518-56491517 Sorghum bicolor
Sobic.006G217000 10.0kb upstream 10.0kb upstream 13798 true Chr06: 56472720-56486517 Sorghum bicolor
Sobic.006G217000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 56472720-56482719 Sorghum bicolor
Sobic.006G217000 10.0kb downstream 10.0kb downstream 13798 true Chr06: 56482720-56496517 Sorghum bicolor
Sobic.006G217000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 56486518-56496517 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195446 5267 Panicoideae View MSA
124577748 5269 Grass View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.872        
cufflinks 2.053       Low
cufflinks 3.88       Low
cufflinks 6.707        
cufflinks 5.813        
cufflinks 12.436       High
cufflinks 4.636        
cufflinks 4.708        
cufflinks 10.079       High
cufflinks 9.159       High
cufflinks 6.003        
cufflinks 6.072        
cufflinks 5.899        
cufflinks 6.365        
cufflinks 6.015        
cufflinks 3.753       Low
cufflinks 4.166        
cufflinks 5.233        
cufflinks 4.722        
cufflinks 4.273        
cufflinks 7.791        
cufflinks 7.672        
cufflinks 6.372        
cufflinks 6.381        
cufflinks 3.539       Low
cufflinks 2.279       Low
cufflinks 6.831        
cufflinks 4.004       Low
cufflinks 7.551        
cufflinks 7.353        

0 Strain