Gene : Sobic.002G360200 S. bicolor v3.1.1
Defline:  (1 of 164) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3686
Name:  ? Sobic.002G360200 Secondary Identifier:  ? PAC:37951899
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G360200 0.5kb upstream 0.5kb upstream 2891 true Chr02: 72240710-72243600 Sorghum bicolor
Sobic.002G360200 0.5kb upstream 0.5kb upstream 500 false Chr02: 72240710-72241209 Sorghum bicolor
Sobic.002G360200 0.5kb downstream 0.5kb downstream 2891 true Chr02: 72241210-72244100 Sorghum bicolor
Sobic.002G360200 0.5kb downstream 0.5kb downstream 500 false Chr02: 72243601-72244100 Sorghum bicolor
Sobic.002G360200 1.0kb upstream 1.0kb upstream 3391 true Chr02: 72240210-72243600 Sorghum bicolor
Sobic.002G360200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 72240210-72241209 Sorghum bicolor
Sobic.002G360200 1.0kb downstream 1.0kb downstream 3391 true Chr02: 72241210-72244600 Sorghum bicolor
Sobic.002G360200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 72243601-72244600 Sorghum bicolor
Sobic.002G360200 2.0kb upstream 2.0kb upstream 4391 true Chr02: 72239210-72243600 Sorghum bicolor
Sobic.002G360200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 72239210-72241209 Sorghum bicolor
Sobic.002G360200 2.0kb downstream 2.0kb downstream 4391 true Chr02: 72241210-72245600 Sorghum bicolor
Sobic.002G360200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 72243601-72245600 Sorghum bicolor
Sobic.002G360200 5.0kb upstream 5.0kb upstream 7391 true Chr02: 72236210-72243600 Sorghum bicolor
Sobic.002G360200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 72236210-72241209 Sorghum bicolor
Sobic.002G360200 5.0kb downstream 5.0kb downstream 7391 true Chr02: 72241210-72248600 Sorghum bicolor
Sobic.002G360200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 72243601-72248600 Sorghum bicolor
Sobic.002G360200 10.0kb upstream 10.0kb upstream 12391 true Chr02: 72231210-72243600 Sorghum bicolor
Sobic.002G360200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 72231210-72241209 Sorghum bicolor
Sobic.002G360200 10.0kb downstream 10.0kb downstream 12391 true Chr02: 72241210-72253600 Sorghum bicolor
Sobic.002G360200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 72243601-72253600 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185641 5267 Panicoideae View MSA
124587536 5269 Grass View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.057        
cufflinks 0.134       Low
cufflinks 0.152       Low
cufflinks 0.825        
cufflinks 2.896       High
cufflinks 1.296        
cufflinks 1.571        
cufflinks 0.709        
cufflinks 1.814        
cufflinks 1.298        
cufflinks 0.463        
cufflinks 0.866        
cufflinks 1.11        
cufflinks 0.686        
cufflinks 1.194        
cufflinks 0.12       Low
cufflinks 1.727        
cufflinks 1.815        
cufflinks 0.156       Low
cufflinks 1.199        
cufflinks 4.904       High
cufflinks 0.96        
cufflinks 0.743        
cufflinks 0.68        
cufflinks 0.096       Low
cufflinks 0.127       Low
cufflinks 0.541        
cufflinks 0.544        
cufflinks 5.609       High
cufflinks 2.288        

0 Strain