Gene : Sobic.002G358800 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR12354//PTHR12354:SF10 - INTERFERON-RELATED DEVELOPMENTAL REGULATOR // SUBFAMILY NOT NAMED Genomic Order:  3672
Name:  ? Sobic.002G358800 Secondary Identifier:  ? PAC:37955252
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G358800 0.5kb upstream 0.5kb upstream 6054 true Chr02: 72111215-72117268 Sorghum bicolor
Sobic.002G358800 0.5kb upstream 0.5kb upstream 500 false Chr02: 72111215-72111714 Sorghum bicolor
Sobic.002G358800 0.5kb downstream 0.5kb downstream 6054 true Chr02: 72111715-72117768 Sorghum bicolor
Sobic.002G358800 0.5kb downstream 0.5kb downstream 500 false Chr02: 72117269-72117768 Sorghum bicolor
Sobic.002G358800 1.0kb upstream 1.0kb upstream 6554 true Chr02: 72110715-72117268 Sorghum bicolor
Sobic.002G358800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 72110715-72111714 Sorghum bicolor
Sobic.002G358800 1.0kb downstream 1.0kb downstream 6554 true Chr02: 72111715-72118268 Sorghum bicolor
Sobic.002G358800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 72117269-72118268 Sorghum bicolor
Sobic.002G358800 2.0kb upstream 2.0kb upstream 7554 true Chr02: 72109715-72117268 Sorghum bicolor
Sobic.002G358800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 72109715-72111714 Sorghum bicolor
Sobic.002G358800 2.0kb downstream 2.0kb downstream 7554 true Chr02: 72111715-72119268 Sorghum bicolor
Sobic.002G358800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 72117269-72119268 Sorghum bicolor
Sobic.002G358800 5.0kb upstream 5.0kb upstream 10554 true Chr02: 72106715-72117268 Sorghum bicolor
Sobic.002G358800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 72106715-72111714 Sorghum bicolor
Sobic.002G358800 5.0kb downstream 5.0kb downstream 10554 true Chr02: 72111715-72122268 Sorghum bicolor
Sobic.002G358800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 72117269-72122268 Sorghum bicolor
Sobic.002G358800 10.0kb upstream 10.0kb upstream 15554 true Chr02: 72101715-72117268 Sorghum bicolor
Sobic.002G358800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 72101715-72111714 Sorghum bicolor
Sobic.002G358800 10.0kb downstream 10.0kb downstream 15554 true Chr02: 72111715-72127268 Sorghum bicolor
Sobic.002G358800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 72117269-72127268 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195662 5267 Panicoideae View MSA
124575322 5269 Grass View MSA
122043831 5273 Angiosperm View MSA
121349485 5274 Embryophyte View MSA
123428444 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.341     High Low
cufflinks 39.972     High  
cufflinks 52.817     High High
cufflinks 39.413     High  
cufflinks 27.946     High  
cufflinks 36.488     High  
cufflinks 39.703     High  
cufflinks 28.164     High  
cufflinks 38.63     High  
cufflinks 31.218     High  
cufflinks 28.641     High  
cufflinks 16.491     High Low
cufflinks 37.934     High  
cufflinks 21.204     High  
cufflinks 39.108     High  
cufflinks 38.221     High  
cufflinks 40.228     High  
cufflinks 36.871     High  
cufflinks 29.852     High  
cufflinks 22.416     High  
cufflinks 21.684     High  
cufflinks 19.398     High Low
cufflinks 27.796     High  
cufflinks 25.914     High  
cufflinks 40.763     High  
cufflinks 35.427     High  
cufflinks 23.71     High  
cufflinks 63.395     High High
cufflinks 21.249     High  
cufflinks 30.477     High  

0 Strain