Gene : Sobic.006G177700 S. bicolor v3.1.1
Defline:  (1 of 6) PF00924 - Mechanosensitive ion channel (MS_channel) Genomic Order:  1856
Name:  ? Sobic.006G177700 Secondary Identifier:  ? PAC:37947783
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G177700 0.5kb upstream 0.5kb upstream 4024 true Chr06: 53243126-53247149 Sorghum bicolor
Sobic.006G177700 0.5kb upstream 0.5kb upstream 500 false Chr06: 53243126-53243625 Sorghum bicolor
Sobic.006G177700 0.5kb downstream 0.5kb downstream 4024 true Chr06: 53243626-53247649 Sorghum bicolor
Sobic.006G177700 0.5kb downstream 0.5kb downstream 500 false Chr06: 53247150-53247649 Sorghum bicolor
Sobic.006G177700 1.0kb upstream 1.0kb upstream 4524 true Chr06: 53242626-53247149 Sorghum bicolor
Sobic.006G177700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 53242626-53243625 Sorghum bicolor
Sobic.006G177700 1.0kb downstream 1.0kb downstream 4524 true Chr06: 53243626-53248149 Sorghum bicolor
Sobic.006G177700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 53247150-53248149 Sorghum bicolor
Sobic.006G177700 2.0kb upstream 2.0kb upstream 5524 true Chr06: 53241626-53247149 Sorghum bicolor
Sobic.006G177700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 53241626-53243625 Sorghum bicolor
Sobic.006G177700 2.0kb downstream 2.0kb downstream 5524 true Chr06: 53243626-53249149 Sorghum bicolor
Sobic.006G177700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 53247150-53249149 Sorghum bicolor
Sobic.006G177700 5.0kb upstream 5.0kb upstream 8524 true Chr06: 53238626-53247149 Sorghum bicolor
Sobic.006G177700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 53238626-53243625 Sorghum bicolor
Sobic.006G177700 5.0kb downstream 5.0kb downstream 8524 true Chr06: 53243626-53252149 Sorghum bicolor
Sobic.006G177700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 53247150-53252149 Sorghum bicolor
Sobic.006G177700 10.0kb upstream 10.0kb upstream 13524 true Chr06: 53233626-53247149 Sorghum bicolor
Sobic.006G177700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 53233626-53243625 Sorghum bicolor
Sobic.006G177700 10.0kb downstream 10.0kb downstream 13524 true Chr06: 53243626-53257149 Sorghum bicolor
Sobic.006G177700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 53247150-53257149 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185977 5267 Panicoideae View MSA
124572484 5269 Grass View MSA
122045304 5273 Angiosperm View MSA
121348130 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.071     Low  
cufflinks 0.204        
cufflinks 0.162        
cufflinks 0.166        
cufflinks 0.007     Low Low
cufflinks 0.148        
cufflinks 0.05     Low  
cufflinks 0.179        
cufflinks 0.01     Low Low
cufflinks 0.014     Low  
cufflinks 0.013     Low  
cufflinks 0.022     Low  
cufflinks 0.005     Low Low
cufflinks 0.021     Low  
cufflinks 4.69       High
cufflinks 0.219       High
cufflinks 0.079     Low  
cufflinks 0.046     Low  
cufflinks 0.136        
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low  
cufflinks 0.008     Low Low
cufflinks 0.067     Low  
cufflinks 0.237       High
cufflinks 0.344       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.018     Low  
cufflinks 0.15        

0 Strain