Gene : Sobic.006G185700 S. bicolor v3.1.1
Defline:  (1 of 1) K04569 - copper chaperone for superoxide dismutase (CCS) Genomic Order:  1935
Name:  ? Sobic.006G185700 Secondary Identifier:  ? PAC:37948533
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G185700 0.5kb upstream 0.5kb upstream 5049 true Chr06: 54079547-54084595 Sorghum bicolor
Sobic.006G185700 0.5kb upstream 0.5kb upstream 500 false Chr06: 54079547-54080046 Sorghum bicolor
Sobic.006G185700 0.5kb downstream 0.5kb downstream 5049 true Chr06: 54080047-54085095 Sorghum bicolor
Sobic.006G185700 0.5kb downstream 0.5kb downstream 500 false Chr06: 54084596-54085095 Sorghum bicolor
Sobic.006G185700 1.0kb upstream 1.0kb upstream 5549 true Chr06: 54079047-54084595 Sorghum bicolor
Sobic.006G185700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 54079047-54080046 Sorghum bicolor
Sobic.006G185700 1.0kb downstream 1.0kb downstream 5549 true Chr06: 54080047-54085595 Sorghum bicolor
Sobic.006G185700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 54084596-54085595 Sorghum bicolor
Sobic.006G185700 2.0kb upstream 2.0kb upstream 6549 true Chr06: 54078047-54084595 Sorghum bicolor
Sobic.006G185700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 54078047-54080046 Sorghum bicolor
Sobic.006G185700 2.0kb downstream 2.0kb downstream 6549 true Chr06: 54080047-54086595 Sorghum bicolor
Sobic.006G185700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 54084596-54086595 Sorghum bicolor
Sobic.006G185700 5.0kb upstream 5.0kb upstream 9549 true Chr06: 54075047-54084595 Sorghum bicolor
Sobic.006G185700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 54075047-54080046 Sorghum bicolor
Sobic.006G185700 5.0kb downstream 5.0kb downstream 9549 true Chr06: 54080047-54089595 Sorghum bicolor
Sobic.006G185700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 54084596-54089595 Sorghum bicolor
Sobic.006G185700 10.0kb upstream 10.0kb upstream 14549 true Chr06: 54070047-54084595 Sorghum bicolor
Sobic.006G185700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 54070047-54080046 Sorghum bicolor
Sobic.006G185700 10.0kb downstream 10.0kb downstream 14549 true Chr06: 54080047-54094595 Sorghum bicolor
Sobic.006G185700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 54084596-54094595 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184206 5267 Panicoideae View MSA
124576422 5269 Grass View MSA
122046170 5273 Angiosperm View MSA
121346754 5274 Embryophyte View MSA
123425336 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.072     High High
cufflinks 4.822       Low
cufflinks 6.334        
cufflinks 9.086        
cufflinks 5.398        
cufflinks 5.367        
cufflinks 7.559        
cufflinks 8.123        
cufflinks 8.96        
cufflinks 8.292        
cufflinks 6.981        
cufflinks 7.773        
cufflinks 5.421        
cufflinks 7.82        
cufflinks 5.571        
cufflinks 6.548        
cufflinks 7.598        
cufflinks 7.592        
cufflinks 3.64       Low
cufflinks 7.21        
cufflinks 4.649       Low
cufflinks 7.905        
cufflinks 8.731        
cufflinks 8.662        
cufflinks 6.877        
cufflinks 5.881        
cufflinks 7.716        
cufflinks 16.937     High High
cufflinks 10.007       High
cufflinks 5.665        

0 Strain