Gene : Sobic.006G190300 S. bicolor v3.1.1
Defline:  (1 of 11) PF07714//PF13947 - Protein tyrosine kinase (Pkinase_Tyr) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  1982
Name:  ? Sobic.006G190300 Secondary Identifier:  ? PAC:37946989
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G190300 0.5kb upstream 0.5kb upstream 3124 true Chr06: 54442103-54445226 Sorghum bicolor
Sobic.006G190300 0.5kb upstream 0.5kb upstream 500 false Chr06: 54442103-54442602 Sorghum bicolor
Sobic.006G190300 0.5kb downstream 0.5kb downstream 3124 true Chr06: 54442603-54445726 Sorghum bicolor
Sobic.006G190300 0.5kb downstream 0.5kb downstream 500 false Chr06: 54445227-54445726 Sorghum bicolor
Sobic.006G190300 1.0kb upstream 1.0kb upstream 3624 true Chr06: 54441603-54445226 Sorghum bicolor
Sobic.006G190300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 54441603-54442602 Sorghum bicolor
Sobic.006G190300 1.0kb downstream 1.0kb downstream 3624 true Chr06: 54442603-54446226 Sorghum bicolor
Sobic.006G190300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 54445227-54446226 Sorghum bicolor
Sobic.006G190300 2.0kb upstream 2.0kb upstream 4624 true Chr06: 54440603-54445226 Sorghum bicolor
Sobic.006G190300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 54440603-54442602 Sorghum bicolor
Sobic.006G190300 2.0kb downstream 2.0kb downstream 4624 true Chr06: 54442603-54447226 Sorghum bicolor
Sobic.006G190300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 54445227-54447226 Sorghum bicolor
Sobic.006G190300 5.0kb upstream 5.0kb upstream 7624 true Chr06: 54437603-54445226 Sorghum bicolor
Sobic.006G190300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 54437603-54442602 Sorghum bicolor
Sobic.006G190300 5.0kb downstream 5.0kb downstream 7624 true Chr06: 54442603-54450226 Sorghum bicolor
Sobic.006G190300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 54445227-54450226 Sorghum bicolor
Sobic.006G190300 10.0kb upstream 10.0kb upstream 12624 true Chr06: 54432603-54445226 Sorghum bicolor
Sobic.006G190300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 54432603-54442602 Sorghum bicolor
Sobic.006G190300 10.0kb downstream 10.0kb downstream 12624 true Chr06: 54442603-54455226 Sorghum bicolor
Sobic.006G190300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 54445227-54455226 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041477 5273 Angiosperm View MSA
122179908 5267 Panicoideae View MSA
124568686 5269 Grass View MSA
121309854 5274 Embryophyte View MSA
123347499 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.197        
cufflinks 0.121        
cufflinks 0.203        
cufflinks 0.524        
cufflinks 0.32        
cufflinks 0.783       High
cufflinks 0.354        
cufflinks 0.066       Low
cufflinks 3.115       High
cufflinks 0.529        
cufflinks 0.29        
cufflinks 0.307        
cufflinks 0.138        
cufflinks 0.307        
cufflinks 0.136        
cufflinks 0.169        
cufflinks 0.306        
cufflinks 0.276        
cufflinks 0.138        
cufflinks 0.941       High
cufflinks 0.251        
cufflinks 0.466        
cufflinks 0.251        
cufflinks 0.498        
cufflinks 0.617        
cufflinks 0.316        
cufflinks 0.026     Low Low
cufflinks 0.009     Low Low
cufflinks 0.13        
cufflinks 0.291        

0 Strain