Gene : Sobic.006G256300 S. bicolor v3.1.1
Defline:  (1 of 4) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  2678
Name:  ? Sobic.006G256300 Secondary Identifier:  ? PAC:37949289
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G256300 0.5kb upstream 0.5kb upstream 6357 true Chr06: 59308934-59315290 Sorghum bicolor
Sobic.006G256300 0.5kb upstream 0.5kb upstream 500 false Chr06: 59314791-59315290 Sorghum bicolor
Sobic.006G256300 0.5kb downstream 0.5kb downstream 6357 true Chr06: 59308434-59314790 Sorghum bicolor
Sobic.006G256300 0.5kb downstream 0.5kb downstream 500 false Chr06: 59308434-59308933 Sorghum bicolor
Sobic.006G256300 1.0kb upstream 1.0kb upstream 6857 true Chr06: 59308934-59315790 Sorghum bicolor
Sobic.006G256300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 59314791-59315790 Sorghum bicolor
Sobic.006G256300 1.0kb downstream 1.0kb downstream 6857 true Chr06: 59307934-59314790 Sorghum bicolor
Sobic.006G256300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 59307934-59308933 Sorghum bicolor
Sobic.006G256300 2.0kb upstream 2.0kb upstream 7857 true Chr06: 59308934-59316790 Sorghum bicolor
Sobic.006G256300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 59314791-59316790 Sorghum bicolor
Sobic.006G256300 2.0kb downstream 2.0kb downstream 7857 true Chr06: 59306934-59314790 Sorghum bicolor
Sobic.006G256300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 59306934-59308933 Sorghum bicolor
Sobic.006G256300 5.0kb upstream 5.0kb upstream 10857 true Chr06: 59308934-59319790 Sorghum bicolor
Sobic.006G256300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 59314791-59319790 Sorghum bicolor
Sobic.006G256300 5.0kb downstream 5.0kb downstream 10857 true Chr06: 59303934-59314790 Sorghum bicolor
Sobic.006G256300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 59303934-59308933 Sorghum bicolor
Sobic.006G256300 10.0kb upstream 10.0kb upstream 15857 true Chr06: 59308934-59324790 Sorghum bicolor
Sobic.006G256300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 59314791-59324790 Sorghum bicolor
Sobic.006G256300 10.0kb downstream 10.0kb downstream 15857 true Chr06: 59298934-59314790 Sorghum bicolor
Sobic.006G256300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 59298934-59308933 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195247 5267 Panicoideae View MSA
124584532 5269 Grass View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.877        
cufflinks 1.443        
cufflinks 0.933        
cufflinks 0.844        
cufflinks 0.331       Low
cufflinks 0.661        
cufflinks 2.624       High
cufflinks 1.658        
cufflinks 1.132        
cufflinks 1.291        
cufflinks 1.549        
cufflinks 2.34       High
cufflinks 0.778        
cufflinks 2.309       High
cufflinks 0.747        
cufflinks 1.113        
cufflinks 2.495       High
cufflinks 2.392       High
cufflinks 0.691        
cufflinks 1.223        
cufflinks 0.541       Low
cufflinks 1.309        
cufflinks 2.443       High
cufflinks 2.279       High
cufflinks 1.75        
cufflinks 1.758        
cufflinks 2.111       High
cufflinks 0.342       Low
cufflinks 2.638       High
cufflinks 1.381        

0 Strain