Gene : Sobic.006G259800 S. bicolor v3.1.1
Defline:  similar to Transcription factor ICE1-like Genomic Order:  2715
Name:  ? Sobic.006G259800 Secondary Identifier:  ? PAC:37945404
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G259800 0.5kb upstream 0.5kb upstream 2730 true Chr06: 59530755-59533484 Sorghum bicolor
Sobic.006G259800 0.5kb upstream 0.5kb upstream 500 false Chr06: 59532985-59533484 Sorghum bicolor
Sobic.006G259800 0.5kb downstream 0.5kb downstream 2730 true Chr06: 59530255-59532984 Sorghum bicolor
Sobic.006G259800 0.5kb downstream 0.5kb downstream 500 false Chr06: 59530255-59530754 Sorghum bicolor
Sobic.006G259800 1.0kb upstream 1.0kb upstream 3230 true Chr06: 59530755-59533984 Sorghum bicolor
Sobic.006G259800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 59532985-59533984 Sorghum bicolor
Sobic.006G259800 1.0kb downstream 1.0kb downstream 3230 true Chr06: 59529755-59532984 Sorghum bicolor
Sobic.006G259800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 59529755-59530754 Sorghum bicolor
Sobic.006G259800 2.0kb upstream 2.0kb upstream 4230 true Chr06: 59530755-59534984 Sorghum bicolor
Sobic.006G259800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 59532985-59534984 Sorghum bicolor
Sobic.006G259800 2.0kb downstream 2.0kb downstream 4230 true Chr06: 59528755-59532984 Sorghum bicolor
Sobic.006G259800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 59528755-59530754 Sorghum bicolor
Sobic.006G259800 5.0kb upstream 5.0kb upstream 7230 true Chr06: 59530755-59537984 Sorghum bicolor
Sobic.006G259800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 59532985-59537984 Sorghum bicolor
Sobic.006G259800 5.0kb downstream 5.0kb downstream 7230 true Chr06: 59525755-59532984 Sorghum bicolor
Sobic.006G259800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 59525755-59530754 Sorghum bicolor
Sobic.006G259800 10.0kb upstream 10.0kb upstream 12230 true Chr06: 59530755-59542984 Sorghum bicolor
Sobic.006G259800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 59532985-59542984 Sorghum bicolor
Sobic.006G259800 10.0kb downstream 10.0kb downstream 12230 true Chr06: 59520755-59532984 Sorghum bicolor
Sobic.006G259800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 59520755-59530754 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122145102 5267 Panicoideae Singleton cluster - no MSA
124437865 5269 Grass Singleton cluster - no MSA
122050715 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.915       Low
cufflinks 6.423     High  
cufflinks 4.794        
cufflinks 5.165        
cufflinks 7.003        
cufflinks 15.445     High High
cufflinks 5.678        
cufflinks 5.332        
cufflinks 7.514        
cufflinks 7.409        
cufflinks 4.535       Low
cufflinks 8.518        
cufflinks 10.446       High
cufflinks 5.996        
cufflinks 9.234       High
cufflinks 6.764        
cufflinks 5.109        
cufflinks 5.516        
cufflinks 9.157       High
cufflinks 6.361        
cufflinks 9.474       High
cufflinks 4.995        
cufflinks 6.45        
cufflinks 6.04        
cufflinks 8.009        
cufflinks 5.876        
cufflinks 4.417       Low
cufflinks 8.458        
cufflinks 6.357        
cufflinks 7.368        

0 Strain