Gene : Sobic.006G265600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13872:SF23 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B Genomic Order:  2775
Name:  ? Sobic.006G265600 Secondary Identifier:  ? PAC:37946113
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G265600 0.5kb upstream 0.5kb upstream 5623 true Chr06: 59952767-59958389 Sorghum bicolor
Sobic.006G265600 0.5kb upstream 0.5kb upstream 500 false Chr06: 59957890-59958389 Sorghum bicolor
Sobic.006G265600 0.5kb downstream 0.5kb downstream 5623 true Chr06: 59952267-59957889 Sorghum bicolor
Sobic.006G265600 0.5kb downstream 0.5kb downstream 500 false Chr06: 59952267-59952766 Sorghum bicolor
Sobic.006G265600 1.0kb upstream 1.0kb upstream 6123 true Chr06: 59952767-59958889 Sorghum bicolor
Sobic.006G265600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 59957890-59958889 Sorghum bicolor
Sobic.006G265600 1.0kb downstream 1.0kb downstream 6123 true Chr06: 59951767-59957889 Sorghum bicolor
Sobic.006G265600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 59951767-59952766 Sorghum bicolor
Sobic.006G265600 2.0kb upstream 2.0kb upstream 7123 true Chr06: 59952767-59959889 Sorghum bicolor
Sobic.006G265600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 59957890-59959889 Sorghum bicolor
Sobic.006G265600 2.0kb downstream 2.0kb downstream 7123 true Chr06: 59950767-59957889 Sorghum bicolor
Sobic.006G265600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 59950767-59952766 Sorghum bicolor
Sobic.006G265600 5.0kb upstream 5.0kb upstream 10123 true Chr06: 59952767-59962889 Sorghum bicolor
Sobic.006G265600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 59957890-59962889 Sorghum bicolor
Sobic.006G265600 5.0kb downstream 5.0kb downstream 10123 true Chr06: 59947767-59957889 Sorghum bicolor
Sobic.006G265600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 59947767-59952766 Sorghum bicolor
Sobic.006G265600 10.0kb upstream 10.0kb upstream 15123 true Chr06: 59952767-59967889 Sorghum bicolor
Sobic.006G265600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 59957890-59967889 Sorghum bicolor
Sobic.006G265600 10.0kb downstream 10.0kb downstream 15123 true Chr06: 59942767-59957889 Sorghum bicolor
Sobic.006G265600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 59942767-59952766 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194713 5267 Panicoideae View MSA
124575756 5269 Grass View MSA
122045472 5273 Angiosperm View MSA
121344925 5274 Embryophyte View MSA
123425256 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.881     High  
cufflinks 3.835       Low
cufflinks 9.911     High Low
cufflinks 16.378     High  
cufflinks 49.963     High  
cufflinks 14.636     High  
cufflinks 25.639     High  
cufflinks 6.693       Low
cufflinks 32.742     High  
cufflinks 34.167     High  
cufflinks 36.871     High  
cufflinks 33.473     High  
cufflinks 28.589     High  
cufflinks 37.198     High  
cufflinks 28.644     High  
cufflinks 10.776     High Low
cufflinks 25.108     High  
cufflinks 25.02     High  
cufflinks 12.021     High  
cufflinks 23.968     High  
cufflinks 44.996     High  
cufflinks 50.865     High  
cufflinks 42.757     High  
cufflinks 44.98     High  
cufflinks 8.01       Low
cufflinks 3.428       Low
cufflinks 30.995     High  
cufflinks 14.415     High  
cufflinks 19.797     High  
cufflinks 41.414     High  

0 Strain