Gene : Sobic.006G282200 S. bicolor v3.1.1
Defline:  (1 of 2) K12666 - oligosaccharyltransferase complex subunit alpha (ribophorin I) (OST1, RPN1) Genomic Order:  2952
Name:  ? Sobic.006G282200 Secondary Identifier:  ? PAC:37945680
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G282200 0.5kb upstream 0.5kb upstream 5549 true Chr06: 61254930-61260478 Sorghum bicolor
Sobic.006G282200 0.5kb upstream 0.5kb upstream 500 false Chr06: 61254930-61255429 Sorghum bicolor
Sobic.006G282200 0.5kb downstream 0.5kb downstream 5549 true Chr06: 61255430-61260978 Sorghum bicolor
Sobic.006G282200 0.5kb downstream 0.5kb downstream 500 false Chr06: 61260479-61260978 Sorghum bicolor
Sobic.006G282200 1.0kb upstream 1.0kb upstream 6049 true Chr06: 61254430-61260478 Sorghum bicolor
Sobic.006G282200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 61254430-61255429 Sorghum bicolor
Sobic.006G282200 1.0kb downstream 1.0kb downstream 6049 true Chr06: 61255430-61261478 Sorghum bicolor
Sobic.006G282200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 61260479-61261478 Sorghum bicolor
Sobic.006G282200 2.0kb upstream 2.0kb upstream 7049 true Chr06: 61253430-61260478 Sorghum bicolor
Sobic.006G282200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 61253430-61255429 Sorghum bicolor
Sobic.006G282200 2.0kb downstream 2.0kb downstream 7049 true Chr06: 61255430-61262478 Sorghum bicolor
Sobic.006G282200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 61260479-61262478 Sorghum bicolor
Sobic.006G282200 5.0kb upstream 5.0kb upstream 10049 true Chr06: 61250430-61260478 Sorghum bicolor
Sobic.006G282200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 61250430-61255429 Sorghum bicolor
Sobic.006G282200 5.0kb downstream 5.0kb downstream 10049 true Chr06: 61255430-61265478 Sorghum bicolor
Sobic.006G282200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 61260479-61265478 Sorghum bicolor
Sobic.006G282200 10.0kb upstream 10.0kb upstream 15049 true Chr06: 61245430-61260478 Sorghum bicolor
Sobic.006G282200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 61245430-61255429 Sorghum bicolor
Sobic.006G282200 10.0kb downstream 10.0kb downstream 15049 true Chr06: 61255430-61270478 Sorghum bicolor
Sobic.006G282200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 61260479-61270478 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180910 5267 Panicoideae View MSA
124581029 5269 Grass View MSA
122045839 5273 Angiosperm View MSA
121344517 5274 Embryophyte View MSA
123425585 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.551        
cufflinks 1.51       Low
cufflinks 4.635        
cufflinks 7.135        
cufflinks 10.293        
cufflinks 7.108        
cufflinks 5.592        
cufflinks 3.162       Low
cufflinks 12.235        
cufflinks 10.79        
cufflinks 11.65        
cufflinks 11.36        
cufflinks 8.261        
cufflinks 11.544     High  
cufflinks 9.691        
cufflinks 4.037       Low
cufflinks 4.872        
cufflinks 5.339        
cufflinks 9.683        
cufflinks 7.393        
cufflinks 12.353        
cufflinks 14.55     High High
cufflinks 11.91     High  
cufflinks 13.323     High  
cufflinks 4.301       Low
cufflinks 1.641       Low
cufflinks 10.266        
cufflinks 3.064       Low
cufflinks 7.453        
cufflinks 12.34     High  

0 Strain