Gene : Sobic.006G220800 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.2.10 - Aminomethyltransferase / Tetrahydrofolate aminomethyltransferase Genomic Order:  2307
Name:  ? Sobic.006G220800 Secondary Identifier:  ? PAC:37947088
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLYCLEAV-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G220800 0.5kb upstream 0.5kb upstream 4060 true Chr06: 56755826-56759885 Sorghum bicolor
Sobic.006G220800 0.5kb upstream 0.5kb upstream 500 false Chr06: 56755826-56756325 Sorghum bicolor
Sobic.006G220800 0.5kb downstream 0.5kb downstream 4060 true Chr06: 56756326-56760385 Sorghum bicolor
Sobic.006G220800 0.5kb downstream 0.5kb downstream 500 false Chr06: 56759886-56760385 Sorghum bicolor
Sobic.006G220800 1.0kb upstream 1.0kb upstream 4560 true Chr06: 56755326-56759885 Sorghum bicolor
Sobic.006G220800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 56755326-56756325 Sorghum bicolor
Sobic.006G220800 1.0kb downstream 1.0kb downstream 4560 true Chr06: 56756326-56760885 Sorghum bicolor
Sobic.006G220800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 56759886-56760885 Sorghum bicolor
Sobic.006G220800 2.0kb upstream 2.0kb upstream 5560 true Chr06: 56754326-56759885 Sorghum bicolor
Sobic.006G220800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 56754326-56756325 Sorghum bicolor
Sobic.006G220800 2.0kb downstream 2.0kb downstream 5560 true Chr06: 56756326-56761885 Sorghum bicolor
Sobic.006G220800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 56759886-56761885 Sorghum bicolor
Sobic.006G220800 5.0kb upstream 5.0kb upstream 8560 true Chr06: 56751326-56759885 Sorghum bicolor
Sobic.006G220800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 56751326-56756325 Sorghum bicolor
Sobic.006G220800 5.0kb downstream 5.0kb downstream 8560 true Chr06: 56756326-56764885 Sorghum bicolor
Sobic.006G220800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 56759886-56764885 Sorghum bicolor
Sobic.006G220800 10.0kb upstream 10.0kb upstream 13560 true Chr06: 56746326-56759885 Sorghum bicolor
Sobic.006G220800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 56746326-56756325 Sorghum bicolor
Sobic.006G220800 10.0kb downstream 10.0kb downstream 13560 true Chr06: 56756326-56769885 Sorghum bicolor
Sobic.006G220800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 56759886-56769885 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176567 5267 Panicoideae View MSA
124572395 5269 Grass View MSA
122045036 5273 Angiosperm View MSA
121345728 5274 Embryophyte View MSA
123424844 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.752       Low
cufflinks 52.351     High High
cufflinks 15.854     High  
cufflinks 12.873     High  
cufflinks 8.062       Low
cufflinks 19.329     High  
cufflinks 30.732     High  
cufflinks 60.952     High High
cufflinks 11.662       Low
cufflinks 11.082       Low
cufflinks 33.916     High  
cufflinks 36.576     High  
cufflinks 48.101     High High
cufflinks 34.236     High  
cufflinks 24.168     High  
cufflinks 48.936     High High
cufflinks 29.794     High  
cufflinks 31.525     High  
cufflinks 24.264     High  
cufflinks 20.068     High  
cufflinks 7.894       Low
cufflinks 30.817     High  
cufflinks 32.206     High  
cufflinks 32.403     High  
cufflinks 26.342     High  
cufflinks 68.308     High High
cufflinks 21.16     High  
cufflinks 2.106       Low
cufflinks 46.203     High High
cufflinks 18.832     High  

0 Strain