Gene : Sobic.006G237200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11671:SF1 - V-TYPE PROTON ATPASE SUBUNIT D Genomic Order:  2478
Name:  ? Sobic.006G237200 Secondary Identifier:  ? PAC:37946088
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G237200 0.5kb upstream 0.5kb upstream 4349 true Chr06: 57856599-57860947 Sorghum bicolor
Sobic.006G237200 0.5kb upstream 0.5kb upstream 500 false Chr06: 57860448-57860947 Sorghum bicolor
Sobic.006G237200 0.5kb downstream 0.5kb downstream 4349 true Chr06: 57856099-57860447 Sorghum bicolor
Sobic.006G237200 0.5kb downstream 0.5kb downstream 500 false Chr06: 57856099-57856598 Sorghum bicolor
Sobic.006G237200 1.0kb upstream 1.0kb upstream 4849 true Chr06: 57856599-57861447 Sorghum bicolor
Sobic.006G237200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 57860448-57861447 Sorghum bicolor
Sobic.006G237200 1.0kb downstream 1.0kb downstream 4849 true Chr06: 57855599-57860447 Sorghum bicolor
Sobic.006G237200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 57855599-57856598 Sorghum bicolor
Sobic.006G237200 2.0kb upstream 2.0kb upstream 5849 true Chr06: 57856599-57862447 Sorghum bicolor
Sobic.006G237200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 57860448-57862447 Sorghum bicolor
Sobic.006G237200 2.0kb downstream 2.0kb downstream 5849 true Chr06: 57854599-57860447 Sorghum bicolor
Sobic.006G237200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 57854599-57856598 Sorghum bicolor
Sobic.006G237200 5.0kb upstream 5.0kb upstream 8849 true Chr06: 57856599-57865447 Sorghum bicolor
Sobic.006G237200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 57860448-57865447 Sorghum bicolor
Sobic.006G237200 5.0kb downstream 5.0kb downstream 8849 true Chr06: 57851599-57860447 Sorghum bicolor
Sobic.006G237200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 57851599-57856598 Sorghum bicolor
Sobic.006G237200 10.0kb upstream 10.0kb upstream 13849 true Chr06: 57856599-57870447 Sorghum bicolor
Sobic.006G237200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 57860448-57870447 Sorghum bicolor
Sobic.006G237200 10.0kb downstream 10.0kb downstream 13849 true Chr06: 57846599-57860447 Sorghum bicolor
Sobic.006G237200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 57846599-57856598 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190831 5267 Panicoideae View MSA
124579703 5269 Grass View MSA
122045398 5273 Angiosperm View MSA
121346383 5274 Embryophyte View MSA
123424080 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.571     High High
cufflinks 9.512     High Low
cufflinks 8.671       Low
cufflinks 13.064     High  
cufflinks 16.117     High  
cufflinks 20.178     High  
cufflinks 15.312     High  
cufflinks 14.826     High  
cufflinks 13.298     High  
cufflinks 12.997     High  
cufflinks 18.756     High  
cufflinks 15.852     High  
cufflinks 12.563     High  
cufflinks 22.902     High High
cufflinks 16.377     High  
cufflinks 10.004     High Low
cufflinks 16.318     High  
cufflinks 15.923     High  
cufflinks 12.224     High  
cufflinks 16.382     High  
cufflinks 8.177       Low
cufflinks 32.15     High High
cufflinks 21.494     High  
cufflinks 21.772     High  
cufflinks 9.933     High Low
cufflinks 10.074     High Low
cufflinks 11.528     High  
cufflinks 26.803     High High
cufflinks 17.982     High  
cufflinks 14.939     High  

0 Strain