Gene : Sobic.006G248900 S. bicolor v3.1.1
Defline:  (1 of 1) K14849 - ribosomal RNA-processing protein 1 (RRP1) Genomic Order:  2600
Name:  ? Sobic.006G248900 Secondary Identifier:  ? PAC:37946912
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G248900 0.5kb upstream 0.5kb upstream 2177 true Chr06: 58810442-58812618 Sorghum bicolor
Sobic.006G248900 0.5kb upstream 0.5kb upstream 500 false Chr06: 58812119-58812618 Sorghum bicolor
Sobic.006G248900 0.5kb downstream 0.5kb downstream 2177 true Chr06: 58809942-58812118 Sorghum bicolor
Sobic.006G248900 0.5kb downstream 0.5kb downstream 500 false Chr06: 58809942-58810441 Sorghum bicolor
Sobic.006G248900 1.0kb upstream 1.0kb upstream 2677 true Chr06: 58810442-58813118 Sorghum bicolor
Sobic.006G248900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 58812119-58813118 Sorghum bicolor
Sobic.006G248900 1.0kb downstream 1.0kb downstream 2677 true Chr06: 58809442-58812118 Sorghum bicolor
Sobic.006G248900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 58809442-58810441 Sorghum bicolor
Sobic.006G248900 2.0kb upstream 2.0kb upstream 3677 true Chr06: 58810442-58814118 Sorghum bicolor
Sobic.006G248900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 58812119-58814118 Sorghum bicolor
Sobic.006G248900 2.0kb downstream 2.0kb downstream 3677 true Chr06: 58808442-58812118 Sorghum bicolor
Sobic.006G248900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 58808442-58810441 Sorghum bicolor
Sobic.006G248900 5.0kb upstream 5.0kb upstream 6677 true Chr06: 58810442-58817118 Sorghum bicolor
Sobic.006G248900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 58812119-58817118 Sorghum bicolor
Sobic.006G248900 5.0kb downstream 5.0kb downstream 6677 true Chr06: 58805442-58812118 Sorghum bicolor
Sobic.006G248900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 58805442-58810441 Sorghum bicolor
Sobic.006G248900 10.0kb upstream 10.0kb upstream 11677 true Chr06: 58810442-58822118 Sorghum bicolor
Sobic.006G248900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 58812119-58822118 Sorghum bicolor
Sobic.006G248900 10.0kb downstream 10.0kb downstream 11677 true Chr06: 58800442-58812118 Sorghum bicolor
Sobic.006G248900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 58800442-58810441 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041241 5273 Angiosperm View MSA
122183527 5267 Panicoideae View MSA
124572220 5269 Grass View MSA
121344172 5274 Embryophyte View MSA
123424078 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.922     High High
cufflinks 11.719     High  
cufflinks 5.847       Low
cufflinks 5.026       Low
cufflinks 16.145     High  
cufflinks 6.601       Low
cufflinks 22.377     High  
cufflinks 10.424     High  
cufflinks 10.339        
cufflinks 14.593     High  
cufflinks 19.038     High  
cufflinks 20.136     High  
cufflinks 13.037     High  
cufflinks 21.825     High  
cufflinks 12.677     High  
cufflinks 7.558       Low
cufflinks 22.786     High  
cufflinks 24.138     High  
cufflinks 13.749     High  
cufflinks 16.761     High  
cufflinks 36.825     High High
cufflinks 17.531     High  
cufflinks 26.662     High High
cufflinks 26.603     High High
cufflinks 11.652     High  
cufflinks 10.175     High  
cufflinks 8.977        
cufflinks 6.167       Low
cufflinks 14.533     High  
cufflinks 16.379     High  

0 Strain