Gene : Sobic.004G007700 S. bicolor v3.1.1
Defline:  (1 of 59) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  75
Name:  ? Sobic.004G007700 Secondary Identifier:  ? PAC:37930526
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G007700 0.5kb upstream 0.5kb upstream 2774 true Chr04: 686550-689323 Sorghum bicolor
Sobic.004G007700 0.5kb upstream 0.5kb upstream 500 false Chr04: 688824-689323 Sorghum bicolor
Sobic.004G007700 0.5kb downstream 0.5kb downstream 2774 true Chr04: 686050-688823 Sorghum bicolor
Sobic.004G007700 0.5kb downstream 0.5kb downstream 500 false Chr04: 686050-686549 Sorghum bicolor
Sobic.004G007700 1.0kb upstream 1.0kb upstream 3274 true Chr04: 686550-689823 Sorghum bicolor
Sobic.004G007700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 688824-689823 Sorghum bicolor
Sobic.004G007700 1.0kb downstream 1.0kb downstream 3274 true Chr04: 685550-688823 Sorghum bicolor
Sobic.004G007700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 685550-686549 Sorghum bicolor
Sobic.004G007700 2.0kb upstream 2.0kb upstream 4274 true Chr04: 686550-690823 Sorghum bicolor
Sobic.004G007700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 688824-690823 Sorghum bicolor
Sobic.004G007700 2.0kb downstream 2.0kb downstream 4274 true Chr04: 684550-688823 Sorghum bicolor
Sobic.004G007700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 684550-686549 Sorghum bicolor
Sobic.004G007700 5.0kb upstream 5.0kb upstream 7274 true Chr04: 686550-693823 Sorghum bicolor
Sobic.004G007700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 688824-693823 Sorghum bicolor
Sobic.004G007700 5.0kb downstream 5.0kb downstream 7274 true Chr04: 681550-688823 Sorghum bicolor
Sobic.004G007700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 681550-686549 Sorghum bicolor
Sobic.004G007700 10.0kb upstream 10.0kb upstream 12274 true Chr04: 686550-698823 Sorghum bicolor
Sobic.004G007700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 688824-698823 Sorghum bicolor
Sobic.004G007700 10.0kb downstream 10.0kb downstream 12274 true Chr04: 676550-688823 Sorghum bicolor
Sobic.004G007700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 676550-686549 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179945 5267 Panicoideae View MSA
124571480 5269 Grass View MSA
122046453 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310608 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.288     High High
cufflinks 0.316       Low
cufflinks 0.688       Low
cufflinks 2.603        
cufflinks 9.888        
cufflinks 1.788        
cufflinks 5.138        
cufflinks 0.671       Low
cufflinks 6.398        
cufflinks 6.151        
cufflinks 11.064        
cufflinks 10.014        
cufflinks 3.661        
cufflinks 11.633     High  
cufflinks 3.812        
cufflinks 0.785       Low
cufflinks 5.7        
cufflinks 5.474        
cufflinks 2.015        
cufflinks 4.21        
cufflinks 19.42     High High
cufflinks 15.052     High  
cufflinks 13.547     High  
cufflinks 16.022     High High
cufflinks 0.457       Low
cufflinks 0.339       Low
cufflinks 6.44        
cufflinks 7.655        
cufflinks 2.85        
cufflinks 7.341        

0 Strain