Gene : Sobic.004G005200 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR21433 - TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA Genomic Order:  49
Name:  ? Sobic.004G005200 Secondary Identifier:  ? PAC:37933754
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G005200 0.5kb upstream 0.5kb upstream 6617 true Chr04: 442158-448774 Sorghum bicolor
Sobic.004G005200 0.5kb upstream 0.5kb upstream 500 false Chr04: 442158-442657 Sorghum bicolor
Sobic.004G005200 0.5kb downstream 0.5kb downstream 6617 true Chr04: 442658-449274 Sorghum bicolor
Sobic.004G005200 0.5kb downstream 0.5kb downstream 500 false Chr04: 448775-449274 Sorghum bicolor
Sobic.004G005200 1.0kb upstream 1.0kb upstream 7117 true Chr04: 441658-448774 Sorghum bicolor
Sobic.004G005200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 441658-442657 Sorghum bicolor
Sobic.004G005200 1.0kb downstream 1.0kb downstream 7117 true Chr04: 442658-449774 Sorghum bicolor
Sobic.004G005200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 448775-449774 Sorghum bicolor
Sobic.004G005200 2.0kb upstream 2.0kb upstream 8117 true Chr04: 440658-448774 Sorghum bicolor
Sobic.004G005200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 440658-442657 Sorghum bicolor
Sobic.004G005200 2.0kb downstream 2.0kb downstream 8117 true Chr04: 442658-450774 Sorghum bicolor
Sobic.004G005200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 448775-450774 Sorghum bicolor
Sobic.004G005200 5.0kb upstream 5.0kb upstream 11117 true Chr04: 437658-448774 Sorghum bicolor
Sobic.004G005200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 437658-442657 Sorghum bicolor
Sobic.004G005200 5.0kb downstream 5.0kb downstream 11117 true Chr04: 442658-453774 Sorghum bicolor
Sobic.004G005200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 448775-453774 Sorghum bicolor
Sobic.004G005200 10.0kb upstream 10.0kb upstream 16117 true Chr04: 432658-448774 Sorghum bicolor
Sobic.004G005200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 432658-442657 Sorghum bicolor
Sobic.004G005200 10.0kb downstream 10.0kb downstream 16117 true Chr04: 442658-458774 Sorghum bicolor
Sobic.004G005200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 448775-458774 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186839 5267 Panicoideae View MSA
124580043 5269 Grass View MSA
122046309 5273 Angiosperm View MSA
121351059 5274 Embryophyte View MSA
123427435 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.177       Low
cufflinks 6.27        
cufflinks 9.312       High
cufflinks 6.863        
cufflinks 2.85       Low
cufflinks 11.701       High
cufflinks 6.805        
cufflinks 5.744        
cufflinks 7.986        
cufflinks 8.178        
cufflinks 4.376        
cufflinks 5.357        
cufflinks 10.882       High
cufflinks 5.057        
cufflinks 9.167       High
cufflinks 9.618       High
cufflinks 6.858        
cufflinks 8.146        
cufflinks 6.0        
cufflinks 6.719        
cufflinks 3.045       Low
cufflinks 5.167        
cufflinks 5.856        
cufflinks 5.205        
cufflinks 5.532        
cufflinks 4.215        
cufflinks 3.913       Low
cufflinks 6.978        
cufflinks 8.461       High
cufflinks 5.907        

0 Strain