Gene : Sobic.004G032400 S. bicolor v3.1.1
Defline:  (1 of 1) 1.4.3.16 - L-aspartate oxidase / LASPO Genomic Order:  343
Name:  ? Sobic.004G032400 Secondary Identifier:  ? PAC:37933257
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PYRIDNUCSYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G032400 0.5kb upstream 0.5kb upstream 5303 true Chr04: 2615248-2620550 Sorghum bicolor
Sobic.004G032400 0.5kb upstream 0.5kb upstream 500 false Chr04: 2615248-2615747 Sorghum bicolor
Sobic.004G032400 0.5kb downstream 0.5kb downstream 5303 true Chr04: 2615748-2621050 Sorghum bicolor
Sobic.004G032400 0.5kb downstream 0.5kb downstream 500 false Chr04: 2620551-2621050 Sorghum bicolor
Sobic.004G032400 1.0kb upstream 1.0kb upstream 5803 true Chr04: 2614748-2620550 Sorghum bicolor
Sobic.004G032400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2614748-2615747 Sorghum bicolor
Sobic.004G032400 1.0kb downstream 1.0kb downstream 5803 true Chr04: 2615748-2621550 Sorghum bicolor
Sobic.004G032400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2620551-2621550 Sorghum bicolor
Sobic.004G032400 2.0kb upstream 2.0kb upstream 6803 true Chr04: 2613748-2620550 Sorghum bicolor
Sobic.004G032400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2613748-2615747 Sorghum bicolor
Sobic.004G032400 2.0kb downstream 2.0kb downstream 6803 true Chr04: 2615748-2622550 Sorghum bicolor
Sobic.004G032400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2620551-2622550 Sorghum bicolor
Sobic.004G032400 5.0kb upstream 5.0kb upstream 9803 true Chr04: 2610748-2620550 Sorghum bicolor
Sobic.004G032400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2610748-2615747 Sorghum bicolor
Sobic.004G032400 5.0kb downstream 5.0kb downstream 9803 true Chr04: 2615748-2625550 Sorghum bicolor
Sobic.004G032400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2620551-2625550 Sorghum bicolor
Sobic.004G032400 10.0kb upstream 10.0kb upstream 14803 true Chr04: 2605748-2620550 Sorghum bicolor
Sobic.004G032400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2605748-2615747 Sorghum bicolor
Sobic.004G032400 10.0kb downstream 10.0kb downstream 14803 true Chr04: 2615748-2630550 Sorghum bicolor
Sobic.004G032400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2620551-2630550 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191259 5267 Panicoideae View MSA
124569754 5269 Grass View MSA
122044025 5273 Angiosperm View MSA
121345783 5274 Embryophyte View MSA
123424759 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.299        
cufflinks 61.613     High High
cufflinks 59.676     High High
cufflinks 9.483        
cufflinks 5.764        
cufflinks 2.083        
cufflinks 32.58     High High
cufflinks 9.981     High  
cufflinks 1.096       Low
cufflinks 0.643       Low
cufflinks 2.09        
cufflinks 2.266        
cufflinks 1.234       Low
cufflinks 4.396        
cufflinks 4.329        
cufflinks 38.478     High High
cufflinks 23.224     High High
cufflinks 36.401     High High
cufflinks 22.219     High High
cufflinks 10.716        
cufflinks 0.925       Low
cufflinks 3.09        
cufflinks 2.827        
cufflinks 3.185        
cufflinks 59.057     High High
cufflinks 44.159     High High
cufflinks 1.623        
cufflinks 0.613       Low
cufflinks 5.561        
cufflinks 2.595        

0 Strain