Gene : Sobic.004G025800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10210//PTHR10210:SF56 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE // SUBFAMILY NOT NAMED Genomic Order:  271
Name:  ? Sobic.004G025800 Secondary Identifier:  ? PAC:37930592
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-662 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G025800 0.5kb upstream 0.5kb upstream 6025 true Chr04: 2057796-2063820 Sorghum bicolor
Sobic.004G025800 0.5kb upstream 0.5kb upstream 500 false Chr04: 2063321-2063820 Sorghum bicolor
Sobic.004G025800 0.5kb downstream 0.5kb downstream 6025 true Chr04: 2057296-2063320 Sorghum bicolor
Sobic.004G025800 0.5kb downstream 0.5kb downstream 500 false Chr04: 2057296-2057795 Sorghum bicolor
Sobic.004G025800 1.0kb upstream 1.0kb upstream 6525 true Chr04: 2057796-2064320 Sorghum bicolor
Sobic.004G025800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2063321-2064320 Sorghum bicolor
Sobic.004G025800 1.0kb downstream 1.0kb downstream 6525 true Chr04: 2056796-2063320 Sorghum bicolor
Sobic.004G025800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2056796-2057795 Sorghum bicolor
Sobic.004G025800 2.0kb upstream 2.0kb upstream 7525 true Chr04: 2057796-2065320 Sorghum bicolor
Sobic.004G025800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2063321-2065320 Sorghum bicolor
Sobic.004G025800 2.0kb downstream 2.0kb downstream 7525 true Chr04: 2055796-2063320 Sorghum bicolor
Sobic.004G025800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2055796-2057795 Sorghum bicolor
Sobic.004G025800 5.0kb upstream 5.0kb upstream 10525 true Chr04: 2057796-2068320 Sorghum bicolor
Sobic.004G025800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2063321-2068320 Sorghum bicolor
Sobic.004G025800 5.0kb downstream 5.0kb downstream 10525 true Chr04: 2052796-2063320 Sorghum bicolor
Sobic.004G025800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2052796-2057795 Sorghum bicolor
Sobic.004G025800 10.0kb upstream 10.0kb upstream 15525 true Chr04: 2057796-2073320 Sorghum bicolor
Sobic.004G025800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2063321-2073320 Sorghum bicolor
Sobic.004G025800 10.0kb downstream 10.0kb downstream 15525 true Chr04: 2047796-2063320 Sorghum bicolor
Sobic.004G025800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2047796-2057795 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181109 5267 Panicoideae View MSA
124589455 5269 Grass View MSA
122042217 5273 Angiosperm View MSA
121347994 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.265        
cufflinks 1.018       Low
cufflinks 3.298        
cufflinks 6.794        
cufflinks 7.477        
cufflinks 5.568        
cufflinks 6.291        
cufflinks 1.813       Low
cufflinks 7.22        
cufflinks 7.94       High
cufflinks 3.277        
cufflinks 3.557        
cufflinks 5.363        
cufflinks 3.008        
cufflinks 6.231        
cufflinks 2.362        
cufflinks 6.779        
cufflinks 7.875       High
cufflinks 1.512       Low
cufflinks 6.35        
cufflinks 10.791       High
cufflinks 3.659        
cufflinks 4.074        
cufflinks 3.983        
cufflinks 1.496       Low
cufflinks 0.571       Low
cufflinks 3.475        
cufflinks 1.84       Low
cufflinks 8.51       High
cufflinks 8.898       High

0 Strain