Gene : Sobic.004G023900 S. bicolor v3.1.1
Defline:  (1 of 1) K01703 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (leuC) Genomic Order:  252
Name:  ? Sobic.004G023900 Secondary Identifier:  ? PAC:37929834
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor BRANCHED-CHAIN-AA-SYN-PWY Sorghum bicolor pathologic  
Sbicolor LEUSYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G023900 0.5kb upstream 0.5kb upstream 4960 true Chr04: 1942652-1947611 Sorghum bicolor
Sobic.004G023900 0.5kb upstream 0.5kb upstream 500 false Chr04: 1947112-1947611 Sorghum bicolor
Sobic.004G023900 0.5kb downstream 0.5kb downstream 4960 true Chr04: 1942152-1947111 Sorghum bicolor
Sobic.004G023900 0.5kb downstream 0.5kb downstream 500 false Chr04: 1942152-1942651 Sorghum bicolor
Sobic.004G023900 1.0kb upstream 1.0kb upstream 5460 true Chr04: 1942652-1948111 Sorghum bicolor
Sobic.004G023900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1947112-1948111 Sorghum bicolor
Sobic.004G023900 1.0kb downstream 1.0kb downstream 5460 true Chr04: 1941652-1947111 Sorghum bicolor
Sobic.004G023900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1941652-1942651 Sorghum bicolor
Sobic.004G023900 2.0kb upstream 2.0kb upstream 6460 true Chr04: 1942652-1949111 Sorghum bicolor
Sobic.004G023900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1947112-1949111 Sorghum bicolor
Sobic.004G023900 2.0kb downstream 2.0kb downstream 6460 true Chr04: 1940652-1947111 Sorghum bicolor
Sobic.004G023900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1940652-1942651 Sorghum bicolor
Sobic.004G023900 5.0kb upstream 5.0kb upstream 9460 true Chr04: 1942652-1952111 Sorghum bicolor
Sobic.004G023900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1947112-1952111 Sorghum bicolor
Sobic.004G023900 5.0kb downstream 5.0kb downstream 9460 true Chr04: 1937652-1947111 Sorghum bicolor
Sobic.004G023900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1937652-1942651 Sorghum bicolor
Sobic.004G023900 10.0kb upstream 10.0kb upstream 14460 true Chr04: 1942652-1957111 Sorghum bicolor
Sobic.004G023900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1947112-1957111 Sorghum bicolor
Sobic.004G023900 10.0kb downstream 10.0kb downstream 14460 true Chr04: 1932652-1947111 Sorghum bicolor
Sobic.004G023900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1932652-1942651 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186218 5267 Panicoideae View MSA
124568502 5269 Grass View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.996     High High
cufflinks 20.621     High  
cufflinks 37.025     High High
cufflinks 47.344     High High
cufflinks 21.829     High  
cufflinks 20.478     High  
cufflinks 24.676     High  
cufflinks 23.161     High  
cufflinks 25.034     High  
cufflinks 24.058     High  
cufflinks 18.518     High  
cufflinks 15.141     High Low
cufflinks 19.288     High  
cufflinks 17.114     High Low
cufflinks 24.119     High  
cufflinks 23.364     High  
cufflinks 25.842     High  
cufflinks 26.512     High  
cufflinks 15.33     High Low
cufflinks 23.87     High  
cufflinks 12.993       Low
cufflinks 19.733     High  
cufflinks 18.119     High  
cufflinks 19.03     High  
cufflinks 21.345     High  
cufflinks 18.563     High  
cufflinks 24.528     High  
cufflinks 29.683     High High
cufflinks 26.873     High  
cufflinks 23.287     High  

0 Strain