Gene : Sobic.004G054500 S. bicolor v3.1.1
Defline:  (1 of 1) K01749 - hydroxymethylbilane synthase (hemC, HMBS) Genomic Order:  568
Name:  ? Sobic.004G054500 Secondary Identifier:  ? PAC:37932855
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5188 Sorghum bicolor pathologic  
Sbicolor PWY-5918 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G054500 0.5kb upstream 0.5kb upstream 3581 true Chr04: 4422885-4426465 Sorghum bicolor
Sobic.004G054500 0.5kb upstream 0.5kb upstream 500 false Chr04: 4422885-4423384 Sorghum bicolor
Sobic.004G054500 0.5kb downstream 0.5kb downstream 3581 true Chr04: 4423385-4426965 Sorghum bicolor
Sobic.004G054500 0.5kb downstream 0.5kb downstream 500 false Chr04: 4426466-4426965 Sorghum bicolor
Sobic.004G054500 1.0kb upstream 1.0kb upstream 4081 true Chr04: 4422385-4426465 Sorghum bicolor
Sobic.004G054500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4422385-4423384 Sorghum bicolor
Sobic.004G054500 1.0kb downstream 1.0kb downstream 4081 true Chr04: 4423385-4427465 Sorghum bicolor
Sobic.004G054500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4426466-4427465 Sorghum bicolor
Sobic.004G054500 2.0kb upstream 2.0kb upstream 5081 true Chr04: 4421385-4426465 Sorghum bicolor
Sobic.004G054500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4421385-4423384 Sorghum bicolor
Sobic.004G054500 2.0kb downstream 2.0kb downstream 5081 true Chr04: 4423385-4428465 Sorghum bicolor
Sobic.004G054500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4426466-4428465 Sorghum bicolor
Sobic.004G054500 5.0kb upstream 5.0kb upstream 8081 true Chr04: 4418385-4426465 Sorghum bicolor
Sobic.004G054500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4418385-4423384 Sorghum bicolor
Sobic.004G054500 5.0kb downstream 5.0kb downstream 8081 true Chr04: 4423385-4431465 Sorghum bicolor
Sobic.004G054500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4426466-4431465 Sorghum bicolor
Sobic.004G054500 10.0kb upstream 10.0kb upstream 13081 true Chr04: 4413385-4426465 Sorghum bicolor
Sobic.004G054500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4413385-4423384 Sorghum bicolor
Sobic.004G054500 10.0kb downstream 10.0kb downstream 13081 true Chr04: 4423385-4436465 Sorghum bicolor
Sobic.004G054500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4426466-4436465 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186675 5267 Panicoideae View MSA
124571224 5269 Grass View MSA
122042710 5273 Angiosperm View MSA
121348830 5274 Embryophyte View MSA
123423964 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.352       Low
cufflinks 13.128     High  
cufflinks 23.716     High  
cufflinks 20.914     High  
cufflinks 10.244        
cufflinks 13.961     High  
cufflinks 67.847     High High
cufflinks 109.252     High High
cufflinks 9.091        
cufflinks 8.569        
cufflinks 7.86        
cufflinks 8.6        
cufflinks 8.846        
cufflinks 8.145        
cufflinks 14.975     High  
cufflinks 21.185     High  
cufflinks 74.588     High High
cufflinks 81.679     High High
cufflinks 31.872     High  
cufflinks 36.091     High  
cufflinks 11.587        
cufflinks 9.75        
cufflinks 8.375        
cufflinks 9.663        
cufflinks 4.301       Low
cufflinks 17.163     High  
cufflinks 6.703        
cufflinks 3.54       Low
cufflinks 214.89     High High
cufflinks 17.21     High  

0 Strain