Gene : Sobic.004G051900 S. bicolor v3.1.1
Defline:  (1 of 14) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  541
Name:  ? Sobic.004G051900 Secondary Identifier:  ? PAC:37933931
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G051900 0.5kb upstream 0.5kb upstream 6682 true Chr04: 4196776-4203457 Sorghum bicolor
Sobic.004G051900 0.5kb upstream 0.5kb upstream 500 false Chr04: 4196776-4197275 Sorghum bicolor
Sobic.004G051900 0.5kb downstream 0.5kb downstream 6682 true Chr04: 4197276-4203957 Sorghum bicolor
Sobic.004G051900 0.5kb downstream 0.5kb downstream 500 false Chr04: 4203458-4203957 Sorghum bicolor
Sobic.004G051900 1.0kb upstream 1.0kb upstream 7182 true Chr04: 4196276-4203457 Sorghum bicolor
Sobic.004G051900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 4196276-4197275 Sorghum bicolor
Sobic.004G051900 1.0kb downstream 1.0kb downstream 7182 true Chr04: 4197276-4204457 Sorghum bicolor
Sobic.004G051900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 4203458-4204457 Sorghum bicolor
Sobic.004G051900 2.0kb upstream 2.0kb upstream 8182 true Chr04: 4195276-4203457 Sorghum bicolor
Sobic.004G051900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 4195276-4197275 Sorghum bicolor
Sobic.004G051900 2.0kb downstream 2.0kb downstream 8182 true Chr04: 4197276-4205457 Sorghum bicolor
Sobic.004G051900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 4203458-4205457 Sorghum bicolor
Sobic.004G051900 5.0kb upstream 5.0kb upstream 11182 true Chr04: 4192276-4203457 Sorghum bicolor
Sobic.004G051900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 4192276-4197275 Sorghum bicolor
Sobic.004G051900 5.0kb downstream 5.0kb downstream 11182 true Chr04: 4197276-4208457 Sorghum bicolor
Sobic.004G051900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 4203458-4208457 Sorghum bicolor
Sobic.004G051900 10.0kb upstream 10.0kb upstream 16182 true Chr04: 4187276-4203457 Sorghum bicolor
Sobic.004G051900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 4187276-4197275 Sorghum bicolor
Sobic.004G051900 10.0kb downstream 10.0kb downstream 16182 true Chr04: 4197276-4213457 Sorghum bicolor
Sobic.004G051900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 4203458-4213457 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191094 5267 Panicoideae View MSA
124575520 5269 Grass View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.598        
cufflinks 0.334       Low
cufflinks 2.777        
cufflinks 1.162       Low
cufflinks 17.051     High High
cufflinks 2.112        
cufflinks 6.881        
cufflinks 1.088       Low
cufflinks 23.388     High High
cufflinks 22.476     High High
cufflinks 7.309        
cufflinks 3.924        
cufflinks 16.742     High High
cufflinks 4.506        
cufflinks 21.73     High High
cufflinks 1.42       Low
cufflinks 5.998        
cufflinks 6.087        
cufflinks 7.714        
cufflinks 4.262        
cufflinks 15.209     High High
cufflinks 4.62        
cufflinks 3.294        
cufflinks 3.718        
cufflinks 0.458       Low
cufflinks 0.262       Low
cufflinks 9.204        
cufflinks 3.007        
cufflinks 1.952        
cufflinks 9.822        

0 Strain