Gene : Sobic.004G092600 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.176//2.1.1.178 - 16S rRNA (cytosine(967)-C(5))-methyltransferase // 16S rRNA (cytosine(1407)-C(5))-methyltransferase Genomic Order:  964
Name:  ? Sobic.004G092600 Secondary Identifier:  ? PAC:37931514
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G092600 0.5kb upstream 0.5kb upstream 7401 true Chr04: 7880101-7887501 Sorghum bicolor
Sobic.004G092600 0.5kb upstream 0.5kb upstream 500 false Chr04: 7880101-7880600 Sorghum bicolor
Sobic.004G092600 0.5kb downstream 0.5kb downstream 7401 true Chr04: 7880601-7888001 Sorghum bicolor
Sobic.004G092600 0.5kb downstream 0.5kb downstream 500 false Chr04: 7887502-7888001 Sorghum bicolor
Sobic.004G092600 1.0kb upstream 1.0kb upstream 7901 true Chr04: 7879601-7887501 Sorghum bicolor
Sobic.004G092600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7879601-7880600 Sorghum bicolor
Sobic.004G092600 1.0kb downstream 1.0kb downstream 7901 true Chr04: 7880601-7888501 Sorghum bicolor
Sobic.004G092600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7887502-7888501 Sorghum bicolor
Sobic.004G092600 2.0kb upstream 2.0kb upstream 8901 true Chr04: 7878601-7887501 Sorghum bicolor
Sobic.004G092600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7878601-7880600 Sorghum bicolor
Sobic.004G092600 2.0kb downstream 2.0kb downstream 8901 true Chr04: 7880601-7889501 Sorghum bicolor
Sobic.004G092600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7887502-7889501 Sorghum bicolor
Sobic.004G092600 5.0kb upstream 5.0kb upstream 11901 true Chr04: 7875601-7887501 Sorghum bicolor
Sobic.004G092600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7875601-7880600 Sorghum bicolor
Sobic.004G092600 5.0kb downstream 5.0kb downstream 11901 true Chr04: 7880601-7892501 Sorghum bicolor
Sobic.004G092600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7887502-7892501 Sorghum bicolor
Sobic.004G092600 10.0kb upstream 10.0kb upstream 16901 true Chr04: 7870601-7887501 Sorghum bicolor
Sobic.004G092600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7870601-7880600 Sorghum bicolor
Sobic.004G092600 10.0kb downstream 10.0kb downstream 16901 true Chr04: 7880601-7897501 Sorghum bicolor
Sobic.004G092600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7887502-7897501 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182925 5267 Panicoideae View MSA
124588079 5269 Grass View MSA
122043756 5273 Angiosperm View MSA
121346877 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.805        
cufflinks 0.407       Low
cufflinks 0.79        
cufflinks 0.998        
cufflinks 1.589       High
cufflinks 1.662       High
cufflinks 0.712        
cufflinks 0.373       Low
cufflinks 1.496       High
cufflinks 1.514       High
cufflinks 0.826        
cufflinks 0.923        
cufflinks 1.333       High
cufflinks 0.55        
cufflinks 0.99        
cufflinks 0.491       Low
cufflinks 0.685        
cufflinks 0.733        
cufflinks 0.49       Low
cufflinks 0.809        
cufflinks 2.199       High
cufflinks 0.89        
cufflinks 0.761        
cufflinks 0.775        
cufflinks 0.631        
cufflinks 0.402       Low
cufflinks 0.875        
cufflinks 0.447       Low
cufflinks 0.554        
cufflinks 1.111        

0 Strain