Gene : Sobic.009G001400 S. bicolor v3.1.1
Defline:  (1 of 2) K12198 - charged multivesicular body protein 5 (CHMP5, VPS60) Genomic Order:  14
Name:  ? Sobic.009G001400 Secondary Identifier:  ? PAC:37922455
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G001400 0.5kb upstream 0.5kb upstream 3608 true Chr09: 158020-161627 Sorghum bicolor
Sobic.009G001400 0.5kb upstream 0.5kb upstream 500 false Chr09: 158020-158519 Sorghum bicolor
Sobic.009G001400 0.5kb downstream 0.5kb downstream 3608 true Chr09: 158520-162127 Sorghum bicolor
Sobic.009G001400 0.5kb downstream 0.5kb downstream 500 false Chr09: 161628-162127 Sorghum bicolor
Sobic.009G001400 1.0kb upstream 1.0kb upstream 4108 true Chr09: 157520-161627 Sorghum bicolor
Sobic.009G001400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 157520-158519 Sorghum bicolor
Sobic.009G001400 1.0kb downstream 1.0kb downstream 4108 true Chr09: 158520-162627 Sorghum bicolor
Sobic.009G001400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 161628-162627 Sorghum bicolor
Sobic.009G001400 2.0kb upstream 2.0kb upstream 5108 true Chr09: 156520-161627 Sorghum bicolor
Sobic.009G001400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 156520-158519 Sorghum bicolor
Sobic.009G001400 2.0kb downstream 2.0kb downstream 5108 true Chr09: 158520-163627 Sorghum bicolor
Sobic.009G001400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 161628-163627 Sorghum bicolor
Sobic.009G001400 5.0kb upstream 5.0kb upstream 8108 true Chr09: 153520-161627 Sorghum bicolor
Sobic.009G001400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 153520-158519 Sorghum bicolor
Sobic.009G001400 5.0kb downstream 5.0kb downstream 8108 true Chr09: 158520-166627 Sorghum bicolor
Sobic.009G001400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 161628-166627 Sorghum bicolor
Sobic.009G001400 10.0kb upstream 10.0kb upstream 13108 true Chr09: 148520-161627 Sorghum bicolor
Sobic.009G001400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 148520-158519 Sorghum bicolor
Sobic.009G001400 10.0kb downstream 10.0kb downstream 13108 true Chr09: 158520-171627 Sorghum bicolor
Sobic.009G001400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 161628-171627 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177140 5267 Panicoideae View MSA
124582350 5269 Grass View MSA
122046094 5273 Angiosperm View MSA
121350870 5274 Embryophyte View MSA
123426524 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.981     High Low
cufflinks 13.765     High Low
cufflinks 46.063     High High
cufflinks 38.902     High High
cufflinks 11.612       Low
cufflinks 25.126     High  
cufflinks 23.46     High  
cufflinks 20.473     High  
cufflinks 30.442     High  
cufflinks 30.164     High  
cufflinks 36.947     High High
cufflinks 31.338     High  
cufflinks 28.137     High  
cufflinks 27.702     High  
cufflinks 26.967     High  
cufflinks 20.76     High  
cufflinks 28.537     High  
cufflinks 23.691     High  
cufflinks 27.197     High  
cufflinks 33.099     High  
cufflinks 6.714       Low
cufflinks 23.696     High  
cufflinks 33.809     High  
cufflinks 29.559     High  
cufflinks 21.678     High  
cufflinks 15.115     High  
cufflinks 38.134     High High
cufflinks 12.42     High Low
cufflinks 20.84     High  
cufflinks 22.462     High  

0 Strain