Gene : Sobic.004G112200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31989:SF48 - PROTEIN SOMBRERO Genomic Order:  1163
Name:  ? Sobic.004G112200 Secondary Identifier:  ? PAC:37931807
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G112200 0.5kb upstream 0.5kb upstream 2363 true Chr04: 11090945-11093307 Sorghum bicolor
Sobic.004G112200 0.5kb upstream 0.5kb upstream 500 false Chr04: 11090945-11091444 Sorghum bicolor
Sobic.004G112200 0.5kb downstream 0.5kb downstream 2363 true Chr04: 11091445-11093807 Sorghum bicolor
Sobic.004G112200 0.5kb downstream 0.5kb downstream 500 false Chr04: 11093308-11093807 Sorghum bicolor
Sobic.004G112200 1.0kb upstream 1.0kb upstream 2863 true Chr04: 11090445-11093307 Sorghum bicolor
Sobic.004G112200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 11090445-11091444 Sorghum bicolor
Sobic.004G112200 1.0kb downstream 1.0kb downstream 2863 true Chr04: 11091445-11094307 Sorghum bicolor
Sobic.004G112200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 11093308-11094307 Sorghum bicolor
Sobic.004G112200 2.0kb upstream 2.0kb upstream 3863 true Chr04: 11089445-11093307 Sorghum bicolor
Sobic.004G112200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 11089445-11091444 Sorghum bicolor
Sobic.004G112200 2.0kb downstream 2.0kb downstream 3863 true Chr04: 11091445-11095307 Sorghum bicolor
Sobic.004G112200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 11093308-11095307 Sorghum bicolor
Sobic.004G112200 5.0kb upstream 5.0kb upstream 6863 true Chr04: 11086445-11093307 Sorghum bicolor
Sobic.004G112200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 11086445-11091444 Sorghum bicolor
Sobic.004G112200 5.0kb downstream 5.0kb downstream 6863 true Chr04: 11091445-11098307 Sorghum bicolor
Sobic.004G112200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 11093308-11098307 Sorghum bicolor
Sobic.004G112200 10.0kb upstream 10.0kb upstream 11863 true Chr04: 11081445-11093307 Sorghum bicolor
Sobic.004G112200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 11081445-11091444 Sorghum bicolor
Sobic.004G112200 10.0kb downstream 10.0kb downstream 11863 true Chr04: 11091445-11103307 Sorghum bicolor
Sobic.004G112200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 11093308-11103307 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196392 5267 Panicoideae View MSA
124580563 5269 Grass View MSA
122045964 5273 Angiosperm View MSA
121351431 5274 Embryophyte View MSA
123382163 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.859       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.153        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low Low
cufflinks 1.808       High
cufflinks 1.146        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.695       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.192        
cufflinks 0.129        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.273        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.184        
cufflinks 1.317        
cufflinks 1.034        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.43        
cufflinks 0.212        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain